JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KCTD8_chr4_44168903_44453809	0/0	t0003	1174	6	3	3	0	0	0	copy fasta	KCTD8	chr4	44168903	44453809
KCTD8_chr4_44168903_44453809	0/0	t0004	1174	3	3	0	0	0	0	copy fasta	KCTD8	chr4	44168903	44453809
KCTD8_chr4_44168903_44453809	0/0	t0005	1174	1	1	0	0	0	0	copy fasta	KCTD8	chr4	44168903	44453809
KCTD8_chr4_44168903_44453809	0/0	t0006	1174	1	1	0	0	0	0	copy fasta	KCTD8	chr4	44168903	44453809
KCTD8_chr4_44168903_44453809	0/0	t0007	1174	1	0	0	0	0	1	copy fasta	KCTD8	chr4	44168903	44453809
KCTD8_chr4_44168903_44453809	0/0	t0008	1174	1	0	0	0	1	0	copy fasta	KCTD8	chr4	44168903	44453809
KCTD8_chr4_44168903_44453809	0/0	t0009	1174	1	0	0	1	0	0	copy fasta	KCTD8	chr4	44168903	44453809
KCTD8_chr4_44168903_44453809	0/0	t0010	1174	1	0	0	1	0	0	copy fasta	KCTD8	chr4	44168903	44453809
KCTD9_chr8_25422847_25463433	1/1	t0001	2198	217	56	34	93	10	22	copy fasta	KCTD9	chr8	25422847	25463433
KCTD9_chr8_25422847_25463433	0/0	t0002	2193	58	3	16	31	4	4	copy fasta	KCTD9	chr8	25422847	25463433
KCTD9_chr8_25422847_25463433	0/0	t0003	2198	30	3	3	21	0	3	copy fasta	KCTD9	chr8	25422847	25463433
KCTD9_chr8_25422847_25463433	0/0	t0004	2199	15	13	0	1	0	1	copy fasta	KCTD9	chr8	25422847	25463433
KCTD9_chr8_25422847_25463433	0/0	t0005	2199	7	5	2	0	0	0	copy fasta	KCTD9	chr8	25422847	25463433
KCTD9_chr8_25422847_25463433	0/0	t0006	2198	4	0	0	4	0	0	copy fasta	KCTD9	chr8	25422847	25463433
KCTD9_chr8_25422847_25463433	0/0	t0007	2199	3	3	0	0	0	0	copy fasta	KCTD9	chr8	25422847	25463433
KCTD9_chr8_25422847_25463433	0/0	t0008	2198	3	0	3	0	0	0	copy fasta	KCTD9	chr8	25422847	25463433
KCTD9_chr8_25422847_25463433	0/0	t0009	2198	2	0	0	2	0	0	copy fasta	KCTD9	chr8	25422847	25463433
KCTD9_chr8_25422847_25463433	0/0	t0010	2199	2	0	0	2	0	0	copy fasta	KCTD9	chr8	25422847	25463433
KCTD9_chr8_25422847_25463433	0/0	t0011	2193	1	0	1	0	0	0	copy fasta	KCTD9	chr8	25422847	25463433
KCTD9_chr8_25422847_25463433	0/0	t0012	2198	1	1	0	0	0	0	copy fasta	KCTD9	chr8	25422847	25463433
KCTD9_chr8_25422847_25463433	0/0	t0013	2198	1	1	0	0	0	0	copy fasta	KCTD9	chr8	25422847	25463433
KCTD9_chr8_25422847_25463433	0/0	t0014	2193	1	0	0	1	0	0	copy fasta	KCTD9	chr8	25422847	25463433
KCTD9_chr8_25422847_25463433	0/0	t0015	2198	1	0	0	1	0	0	copy fasta	KCTD9	chr8	25422847	25463433
KCTD9_chr8_25422847_25463433	0/0	t0016	2193	1	0	0	0	0	1	copy fasta	KCTD9	chr8	25422847	25463433
KCTD9_chr8_25422847_25463433	0/0	t0017	2198	1	0	0	0	0	1	copy fasta	KCTD9	chr8	25422847	25463433
KCTD9_chr8_25422847_25463433	0/0	t0018	2198	1	1	0	0	0	0	copy fasta	KCTD9	chr8	25422847	25463433
KCTD9_chr8_25422847_25463433	0/0	t0019	2193	1	0	1	0	0	0	copy fasta	KCTD9	chr8	25422847	25463433
KDELR1_chr19_48377575_48396551	1/0	t0001	912	303	74	50	133	11	34	copy fasta	KDELR1	chr19	48377575	48396551
KDELR1_chr19_48377575_48396551	0/1	t0002	912	99	5	20	56	5	12	copy fasta	KDELR1	chr19	48377575	48396551
KDELR1_chr19_48377575_48396551	0/0	t0003	909	8	4	4	0	0	0	copy fasta	KDELR1	chr19	48377575	48396551
KDELR1_chr19_48377575_48396551	0/0	t0004	913	7	7	0	0	0	0	copy fasta	KDELR1	chr19	48377575	48396551
KDELR1_chr19_48377575_48396551	0/0	t0005	912	6	5	1	0	0	0	copy fasta	KDELR1	chr19	48377575	48396551
KDELR1_chr19_48377575_48396551	0/0	t0006	912	2	0	0	2	0	0	copy fasta	KDELR1	chr19	48377575	48396551
KDELR1_chr19_48377575_48396551	0/0	t0007	912	1	0	1	0	0	0	copy fasta	KDELR1	chr19	48377575	48396551
KDELR1_chr19_48377575_48396551	0/0	t0008	912	1	1	0	0	0	0	copy fasta	KDELR1	chr19	48377575	48396551
KDELR1_chr19_48377575_48396551	0/0	t0009	912	1	0	1	0	0	0	copy fasta	KDELR1	chr19	48377575	48396551
KDELR1_chr19_48377575_48396551	0/0	t0010	912	1	0	0	1	0	0	copy fasta	KDELR1	chr19	48377575	48396551
KDELR1_chr19_48377575_48396551	0/0	t0011	912	1	0	1	0	0	0	copy fasta	KDELR1	chr19	48377575	48396551
KDELR1_chr19_48377575_48396551	0/0	t0012	912	1	0	0	1	0	0	copy fasta	KDELR1	chr19	48377575	48396551
KDELR1_chr19_48377575_48396551	0/0	t0013	912	1	0	0	1	0	0	copy fasta	KDELR1	chr19	48377575	48396551
KDELR2_chr7_6456089_6489152	0/0	t0001	2144	147	33	22	70	4	18	copy fasta	KDELR2	chr7	6456089	6489152
KDELR2_chr7_6456089_6489152	1/0	t0002	2148	127	12	8	89	2	15	copy fasta	KDELR2	chr7	6456089	6489152
KDELR2_chr7_6456089_6489152	0/1	t0003	2144	112	30	36	23	10	12	copy fasta	KDELR2	chr7	6456089	6489152
KDELR2_chr7_6456089_6489152	0/0	t0004	2144	7	7	0	0	0	0	copy fasta	KDELR2	chr7	6456089	6489152
KDELR2_chr7_6456089_6489152	0/0	t0005	2144	5	5	0	0	0	0	copy fasta	KDELR2	chr7	6456089	6489152
KDELR2_chr7_6456089_6489152	0/0	t0006	2148	4	0	4	0	0	0	copy fasta	KDELR2	chr7	6456089	6489152
KDELR2_chr7_6456089_6489152	0/0	t0007	2144	3	3	0	0	0	0	copy fasta	KDELR2	chr7	6456089	6489152
KDELR2_chr7_6456089_6489152	0/0	t0008	2144	3	2	1	0	0	0	copy fasta	KDELR2	chr7	6456089	6489152
KDELR2_chr7_6456089_6489152	0/0	t0009	2144	2	0	2	0	0	0	copy fasta	KDELR2	chr7	6456089	6489152
KDELR2_chr7_6456089_6489152	0/0	t0010	2144	2	0	0	2	0	0	copy fasta	KDELR2	chr7	6456089	6489152