JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KDELR2_chr7_6456089_6489152	0/0	t0011	2148	1	0	0	1	0	0	copy fasta	KDELR2	chr7	6456089	6489152
KDELR2_chr7_6456089_6489152	0/0	t0012	2144	1	1	0	0	0	0	copy fasta	KDELR2	chr7	6456089	6489152
KDELR2_chr7_6456089_6489152	0/0	t0013	2144	1	1	0	0	0	0	copy fasta	KDELR2	chr7	6456089	6489152
KDELR2_chr7_6456089_6489152	0/0	t0014	2144	1	1	0	0	0	0	copy fasta	KDELR2	chr7	6456089	6489152
KDELR2_chr7_6456089_6489152	0/0	t0015	2144	1	1	0	0	0	0	copy fasta	KDELR2	chr7	6456089	6489152
KDELR2_chr7_6456089_6489152	0/0	t0016	2144	1	0	0	0	0	1	copy fasta	KDELR2	chr7	6456089	6489152
KDELR2_chr7_6456089_6489152	0/0	t0017	2148	1	0	1	0	0	0	copy fasta	KDELR2	chr7	6456089	6489152
KDELR2_chr7_6456089_6489152	0/0	t0018	2148	1	0	0	1	0	0	copy fasta	KDELR2	chr7	6456089	6489152
KDELR3_chr22_38463096_38488447	0/0	t0001	1050	186	37	47	70	8	24	copy fasta	KDELR3	chr22	38463096	38488447
KDELR3_chr22_38463096_38488447	0/1	t0002	1050	152	40	18	72	3	18	copy fasta	KDELR3	chr22	38463096	38488447
KDELR3_chr22_38463096_38488447	1/0	t0003	1050	53	9	0	42	0	1	copy fasta	KDELR3	chr22	38463096	38488447
KDELR3_chr22_38463096_38488447	0/0	t0004	1050	6	0	5	1	0	0	copy fasta	KDELR3	chr22	38463096	38488447
KDELR3_chr22_38463096_38488447	0/0	t0005	1050	2	2	0	0	0	0	copy fasta	KDELR3	chr22	38463096	38488447
KDELR3_chr22_38463096_38488447	0/0	t0006	1050	1	1	0	0	0	0	copy fasta	KDELR3	chr22	38463096	38488447
KDELR3_chr22_38463096_38488447	0/0	t0007	1050	1	1	0	0	0	0	copy fasta	KDELR3	chr22	38463096	38488447
KDELR3_chr22_38463096_38488447	0/0	t0008	1050	1	0	0	0	1	0	copy fasta	KDELR3	chr22	38463096	38488447
KDELR3_chr22_38463096_38488447	0/0	t0009	1050	1	0	0	0	0	1	copy fasta	KDELR3	chr22	38463096	38488447
KDELR3_chr22_38463096_38488447	0/0	t0010	1050	1	0	0	1	0	0	copy fasta	KDELR3	chr22	38463096	38488447
KDF1_chr1_26944562_26965468	1/1	t0001	659	267	76	47	90	14	38	copy fasta	KDF1	chr1	26944562	26965468
KDF1_chr1_26944562_26965468	0/0	t0002	659	5	0	1	4	0	0	copy fasta	KDF1	chr1	26944562	26965468
KDF1_chr1_26944562_26965468	0/0	t0003	659	3	3	0	0	0	0	copy fasta	KDF1	chr1	26944562	26965468
KDF1_chr1_26944562_26965468	0/0	t0004	659	3	3	0	0	0	0	copy fasta	KDF1	chr1	26944562	26965468
KDM1A_chr1_23014468_23088689	0/0	t0001	455	148	36	26	66	7	13	copy fasta	KDM1A	chr1	23014468	23088689
KDM1A_chr1_23014468_23088689	1/0	t0002	455	91	12	18	44	3	13	copy fasta	KDM1A	chr1	23014468	23088689
KDM1A_chr1_23014468_23088689	0/1	t0003	456	68	9	9	45	0	4	copy fasta	KDM1A	chr1	23014468	23088689
KDM1A_chr1_23014468_23088689	0/0	t0004	455	30	25	5	0	0	0	copy fasta	KDM1A	chr1	23014468	23088689
KDM1A_chr1_23014468_23088689	0/0	t0005	455	9	7	2	0	0	0	copy fasta	KDM1A	chr1	23014468	23088689
KDM1A_chr1_23014468_23088689	0/0	t0006	459	4	0	0	4	0	0	copy fasta	KDM1A	chr1	23014468	23088689
KDM1A_chr1_23014468_23088689	0/0	t0007	455	1	0	0	1	0	0	copy fasta	KDM1A	chr1	23014468	23088689
KDM1A_chr1_23014468_23088689	0/0	t0008	455	1	1	0	0	0	0	copy fasta	KDM1A	chr1	23014468	23088689
KDM1B_chr6_18150422_18228854	1/1	t0001	2070	184	24	28	105	10	15	copy fasta	KDM1B	chr6	18150422	18228854
KDM1B_chr6_18150422_18228854	0/0	t0002	2070	98	38	19	25	3	13	copy fasta	KDM1B	chr6	18150422	18228854
KDM1B_chr6_18150422_18228854	0/0	t0003	2071	39	5	4	22	0	8	copy fasta	KDM1B	chr6	18150422	18228854
KDM1B_chr6_18150422_18228854	0/0	t0004	2071	23	5	8	6	1	3	copy fasta	KDM1B	chr6	18150422	18228854
KDM1B_chr6_18150422_18228854	0/0	t0005	2071	6	0	4	2	0	0	copy fasta	KDM1B	chr6	18150422	18228854
KDM1B_chr6_18150422_18228854	0/0	t0006	2061	5	5	0	0	0	0	copy fasta	KDM1B	chr6	18150422	18228854
KDM1B_chr6_18150422_18228854	0/0	t0007	2069	4	4	0	0	0	0	copy fasta	KDM1B	chr6	18150422	18228854
KDM1B_chr6_18150422_18228854	0/0	t0008	2070	3	1	0	1	0	1	copy fasta	KDM1B	chr6	18150422	18228854
KDM1B_chr6_18150422_18228854	0/0	t0009	2075	3	3	0	0	0	0	copy fasta	KDM1B	chr6	18150422	18228854
KDM1B_chr6_18150422_18228854	0/0	t0010	2070	3	0	2	0	0	1	copy fasta	KDM1B	chr6	18150422	18228854
KDM1B_chr6_18150422_18228854	0/0	t0011	2074	3	2	1	0	0	0	copy fasta	KDM1B	chr6	18150422	18228854
KDM1B_chr6_18150422_18228854	0/0	t0012	2070	2	0	0	2	0	0	copy fasta	KDM1B	chr6	18150422	18228854
KDM1B_chr6_18150422_18228854	0/0	t0013	2070	2	2	0	0	0	0	copy fasta	KDM1B	chr6	18150422	18228854
KDM1B_chr6_18150422_18228854	0/0	t0014	2070	2	0	2	0	0	0	copy fasta	KDM1B	chr6	18150422	18228854
KDM1B_chr6_18150422_18228854	0/0	t0015	2070	2	1	1	0	0	0	copy fasta	KDM1B	chr6	18150422	18228854
KDM1B_chr6_18150422_18228854	0/0	t0016	2061	1	1	0	0	0	0	copy fasta	KDM1B	chr6	18150422	18228854
KDM1B_chr6_18150422_18228854	0/0	t0017	2061	1	1	0	0	0	0	copy fasta	KDM1B	chr6	18150422	18228854
KDM1B_chr6_18150422_18228854	0/0	t0018	2071	1	1	0	0	0	0	copy fasta	KDM1B	chr6	18150422	18228854
KDM1B_chr6_18150422_18228854	0/0	t0019	2070	1	0	0	0	0	1	copy fasta	KDM1B	chr6	18150422	18228854
KDM1B_chr6_18150422_18228854	0/0	t0020	2071	1	0	0	1	0	0	copy fasta	KDM1B	chr6	18150422	18228854