JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KDM1B_chr6_18150422_18228854	0/0	t0021	2071	1	1	0	0	0	0	copy fasta	KDM1B	chr6	18150422	18228854
KDM1B_chr6_18150422_18228854	0/0	t0022	2070	1	1	0	0	0	0	copy fasta	KDM1B	chr6	18150422	18228854
KDM1B_chr6_18150422_18228854	0/0	t0023	2071	1	0	1	0	0	0	copy fasta	KDM1B	chr6	18150422	18228854
KDM1B_chr6_18150422_18228854	0/0	t0024	2070	1	0	0	1	0	0	copy fasta	KDM1B	chr6	18150422	18228854
KDM1B_chr6_18150422_18228854	0/0	t0025	2070	1	1	0	0	0	0	copy fasta	KDM1B	chr6	18150422	18228854
KDM1B_chr6_18150422_18228854	0/0	t0026	2069	1	1	0	0	0	0	copy fasta	KDM1B	chr6	18150422	18228854
KDM1B_chr6_18150422_18228854	0/0	t0027	2070	1	1	0	0	0	0	copy fasta	KDM1B	chr6	18150422	18228854
KDM1B_chr6_18150422_18228854	0/0	t0028	2070	1	0	0	1	0	0	copy fasta	KDM1B	chr6	18150422	18228854
KDM2A_chr11_67114263_67263082	1/1	t0001	3898	166	48	41	69	2	4	copy fasta	KDM2A	chr11	67114263	67263082
KDM2A_chr11_67114263_67263082	0/0	t0002	3898	31	30	1	0	0	0	copy fasta	KDM2A	chr11	67114263	67263082
KDM2A_chr11_67114263_67263082	0/0	t0003	3894	7	0	0	7	0	0	copy fasta	KDM2A	chr11	67114263	67263082
KDM2A_chr11_67114263_67263082	0/0	t0004	3898	4	1	3	0	0	0	copy fasta	KDM2A	chr11	67114263	67263082
KDM2A_chr11_67114263_67263082	0/0	t0005	3898	3	0	0	3	0	0	copy fasta	KDM2A	chr11	67114263	67263082
KDM2A_chr11_67114263_67263082	0/0	t0006	3898	3	2	1	0	0	0	copy fasta	KDM2A	chr11	67114263	67263082
KDM2A_chr11_67114263_67263082	0/0	t0007	3898	1	0	1	0	0	0	copy fasta	KDM2A	chr11	67114263	67263082
KDM2A_chr11_67114263_67263082	0/0	t0008	3898	1	0	0	1	0	0	copy fasta	KDM2A	chr11	67114263	67263082
KDM2A_chr11_67114263_67263082	0/0	t0009	3898	1	1	0	0	0	0	copy fasta	KDM2A	chr11	67114263	67263082
KDM2A_chr11_67114263_67263082	0/0	t0010	3898	1	1	0	0	0	0	copy fasta	KDM2A	chr11	67114263	67263082
KDM2A_chr11_67114263_67263082	0/0	t0011	3898	1	0	1	0	0	0	copy fasta	KDM2A	chr11	67114263	67263082
KDM2A_chr11_67114263_67263082	0/0	t0012	3898	1	1	0	0	0	0	copy fasta	KDM2A	chr11	67114263	67263082
KDM2B_chr12_121424096_121586023	1/1	t0001	1305	168	34	34	68	9	21	copy fasta	KDM2B	chr12	121424096	121586023
KDM2B_chr12_121424096_121586023	0/0	t0002	1305	52	35	1	16	0	0	copy fasta	KDM2B	chr12	121424096	121586023
KDM2B_chr12_121424096_121586023	0/0	t0003	1305	20	0	9	1	1	9	copy fasta	KDM2B	chr12	121424096	121586023
KDM2B_chr12_121424096_121586023	0/0	t0004	1305	10	10	0	0	0	0	copy fasta	KDM2B	chr12	121424096	121586023
KDM2B_chr12_121424096_121586023	0/0	t0005	1305	4	2	2	0	0	0	copy fasta	KDM2B	chr12	121424096	121586023
KDM2B_chr12_121424096_121586023	0/0	t0006	1305	3	3	0	0	0	0	copy fasta	KDM2B	chr12	121424096	121586023
KDM2B_chr12_121424096_121586023	0/0	t0007	1305	3	3	0	0	0	0	copy fasta	KDM2B	chr12	121424096	121586023
KDM2B_chr12_121424096_121586023	0/0	t0008	1305	2	0	0	1	0	1	copy fasta	KDM2B	chr12	121424096	121586023
KDM2B_chr12_121424096_121586023	0/0	t0009	1305	2	0	0	2	0	0	copy fasta	KDM2B	chr12	121424096	121586023
KDM2B_chr12_121424096_121586023	0/0	t0010	1305	2	0	0	2	0	0	copy fasta	KDM2B	chr12	121424096	121586023
KDM2B_chr12_121424096_121586023	0/0	t0011	1305	1	1	0	0	0	0	copy fasta	KDM2B	chr12	121424096	121586023
KDM2B_chr12_121424096_121586023	0/0	t0012	1305	1	1	0	0	0	0	copy fasta	KDM2B	chr12	121424096	121586023
KDM2B_chr12_121424096_121586023	0/0	t0013	1305	1	1	0	0	0	0	copy fasta	KDM2B	chr12	121424096	121586023
KDM2B_chr12_121424096_121586023	0/0	t0014	1305	1	0	0	0	0	1	copy fasta	KDM2B	chr12	121424096	121586023
KDM3A_chr2_86436371_86497716	1/1	t0001	702	299	93	64	99	13	28	copy fasta	KDM3A	chr2	86436371	86497716
KDM3A_chr2_86436371_86497716	0/0	t0002	702	1	0	0	1	0	0	copy fasta	KDM3A	chr2	86436371	86497716
KDM3A_chr2_86436371_86497716	0/0	t0003	702	1	0	0	0	1	0	copy fasta	KDM3A	chr2	86436371	86497716
KDM3A_chr2_86436371_86497716	0/0	t0004	702	1	1	0	0	0	0	copy fasta	KDM3A	chr2	86436371	86497716
KDM3B_chr5_138347685_138442027	0/0	t0001	1438	120	33	9	65	3	10	copy fasta	KDM3B	chr5	138347685	138442027
KDM3B_chr5_138347685_138442027	0/1	t0002	1437	97	8	19	51	5	13	copy fasta	KDM3B	chr5	138347685	138442027
KDM3B_chr5_138347685_138442027	0/0	t0003	1439	80	17	27	23	6	7	copy fasta	KDM3B	chr5	138347685	138442027
KDM3B_chr5_138347685_138442027	0/0	t0004	1439	12	2	1	6	0	3	copy fasta	KDM3B	chr5	138347685	138442027
KDM3B_chr5_138347685_138442027	0/0	t0005	1437	10	2	3	5	0	0	copy fasta	KDM3B	chr5	138347685	138442027
KDM3B_chr5_138347685_138442027	0/0	t0006	1437	9	1	6	0	1	1	copy fasta	KDM3B	chr5	138347685	138442027
KDM3B_chr5_138347685_138442027	1/0	t0007	1439	8	7	0	0	0	0	copy fasta	KDM3B	chr5	138347685	138442027
KDM3B_chr5_138347685_138442027	0/0	t0008	1438	6	3	1	1	0	1	copy fasta	KDM3B	chr5	138347685	138442027
KDM3B_chr5_138347685_138442027	0/0	t0009	1440	5	2	2	0	1	0	copy fasta	KDM3B	chr5	138347685	138442027
KDM3B_chr5_138347685_138442027	0/0	t0010	1436	5	0	1	3	0	1	copy fasta	KDM3B	chr5	138347685	138442027
KDM3B_chr5_138347685_138442027	0/0	t0011	1438	1	1	0	0	0	0	copy fasta	KDM3B	chr5	138347685	138442027
KDM3B_chr5_138347685_138442027	0/0	t0012	1440	1	0	1	0	0	0	copy fasta	KDM3B	chr5	138347685	138442027