JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KDM3B_chr5_138347685_138442027	0/0	t0013	1439	1	0	0	1	0	0	copy fasta	KDM3B	chr5	138347685	138442027
KDM3B_chr5_138347685_138442027	0/0	t0014	1436	1	0	0	1	0	0	copy fasta	KDM3B	chr5	138347685	138442027
KDM4A_chr1_43645149_43710518	1/1	t0001	1292	343	73	51	165	12	40	copy fasta	KDM4A	chr1	43645149	43710518
KDM4A_chr1_43645149_43710518	0/0	t0002	1288	10	8	1	1	0	0	copy fasta	KDM4A	chr1	43645149	43710518
KDM4A_chr1_43645149_43710518	0/0	t0003	1292	9	8	1	0	0	0	copy fasta	KDM4A	chr1	43645149	43710518
KDM4A_chr1_43645149_43710518	0/0	t0004	1292	4	4	0	0	0	0	copy fasta	KDM4A	chr1	43645149	43710518
KDM4A_chr1_43645149_43710518	0/0	t0005	1292	2	0	0	2	0	0	copy fasta	KDM4A	chr1	43645149	43710518
KDM4A_chr1_43645149_43710518	0/0	t0006	1292	1	0	1	0	0	0	copy fasta	KDM4A	chr1	43645149	43710518
KDM4A_chr1_43645149_43710518	0/0	t0007	1292	1	1	0	0	0	0	copy fasta	KDM4A	chr1	43645149	43710518
KDM4B_chr19_4964113_5158598	0/0	t0001	2314	57	9	7	27	3	11	copy fasta	KDM4B	chr19	4964113	5158598
KDM4B_chr19_4964113_5158598	1/0	t0002	2314	39	19	6	4	2	7	copy fasta	KDM4B	chr19	4964113	5158598
KDM4B_chr19_4964113_5158598	0/0	t0003	2316	37	6	17	9	1	4	copy fasta	KDM4B	chr19	4964113	5158598
KDM4B_chr19_4964113_5158598	0/0	t0004	2314	32	0	9	19	1	3	copy fasta	KDM4B	chr19	4964113	5158598
KDM4B_chr19_4964113_5158598	0/1	t0005	2316	17	3	6	0	2	5	copy fasta	KDM4B	chr19	4964113	5158598
KDM4B_chr19_4964113_5158598	0/0	t0006	2316	15	11	3	0	1	0	copy fasta	KDM4B	chr19	4964113	5158598
KDM4B_chr19_4964113_5158598	0/0	t0007	2316	12	1	8	0	0	3	copy fasta	KDM4B	chr19	4964113	5158598
KDM4B_chr19_4964113_5158598	0/0	t0008	2314	7	0	0	7	0	0	copy fasta	KDM4B	chr19	4964113	5158598
KDM4B_chr19_4964113_5158598	0/0	t0009	2316	6	6	0	0	0	0	copy fasta	KDM4B	chr19	4964113	5158598
KDM4B_chr19_4964113_5158598	0/0	t0010	2314	5	5	0	0	0	0	copy fasta	KDM4B	chr19	4964113	5158598
KDM4B_chr19_4964113_5158598	0/0	t0011	2314	5	0	4	0	0	1	copy fasta	KDM4B	chr19	4964113	5158598
KDM4B_chr19_4964113_5158598	0/0	t0012	2317	4	4	0	0	0	0	copy fasta	KDM4B	chr19	4964113	5158598
KDM4B_chr19_4964113_5158598	0/0	t0013	2314	3	0	0	0	0	3	copy fasta	KDM4B	chr19	4964113	5158598
KDM4B_chr19_4964113_5158598	0/0	t0014	2314	3	0	2	1	0	0	copy fasta	KDM4B	chr19	4964113	5158598
KDM4B_chr19_4964113_5158598	0/0	t0015	2316	2	0	1	0	0	1	copy fasta	KDM4B	chr19	4964113	5158598
KDM4B_chr19_4964113_5158598	0/0	t0016	2316	2	0	0	2	0	0	copy fasta	KDM4B	chr19	4964113	5158598
KDM4B_chr19_4964113_5158598	0/0	t0017	2316	2	2	0	0	0	0	copy fasta	KDM4B	chr19	4964113	5158598
KDM4B_chr19_4964113_5158598	0/0	t0018	2314	2	0	0	2	0	0	copy fasta	KDM4B	chr19	4964113	5158598
KDM4B_chr19_4964113_5158598	0/0	t0019	2314	2	0	2	0	0	0	copy fasta	KDM4B	chr19	4964113	5158598
KDM4B_chr19_4964113_5158598	0/0	t0020	2314	2	2	0	0	0	0	copy fasta	KDM4B	chr19	4964113	5158598
KDM4B_chr19_4964113_5158598	0/0	t0021	2314	1	0	0	1	0	0	copy fasta	KDM4B	chr19	4964113	5158598
KDM4B_chr19_4964113_5158598	0/0	t0022	2316	1	1	0	0	0	0	copy fasta	KDM4B	chr19	4964113	5158598
KDM4B_chr19_4964113_5158598	0/0	t0023	2316	1	0	1	0	0	0	copy fasta	KDM4B	chr19	4964113	5158598
KDM4B_chr19_4964113_5158598	0/0	t0024	2314	1	0	0	0	0	1	copy fasta	KDM4B	chr19	4964113	5158598
KDM4B_chr19_4964113_5158598	0/0	t0025	2315	1	1	0	0	0	0	copy fasta	KDM4B	chr19	4964113	5158598
KDM4B_chr19_4964113_5158598	0/0	t0026	2314	1	1	0	0	0	0	copy fasta	KDM4B	chr19	4964113	5158598
KDM4B_chr19_4964113_5158598	0/0	t0027	2314	1	1	0	0	0	0	copy fasta	KDM4B	chr19	4964113	5158598
KDM4B_chr19_4964113_5158598	0/0	t0028	2315	1	1	0	0	0	0	copy fasta	KDM4B	chr19	4964113	5158598
KDM4B_chr19_4964113_5158598	0/0	t0029	2314	1	1	0	0	0	0	copy fasta	KDM4B	chr19	4964113	5158598
KDM4B_chr19_4964113_5158598	0/0	t0030	2314	1	0	0	0	0	1	copy fasta	KDM4B	chr19	4964113	5158598
KDM4B_chr19_4964113_5158598	0/0	t0031	2314	1	0	0	0	0	1	copy fasta	KDM4B	chr19	4964113	5158598
KDM4B_chr19_4964113_5158598	0/0	t0032	2316	1	1	0	0	0	0	copy fasta	KDM4B	chr19	4964113	5158598
KDM4B_chr19_4964113_5158598	0/0	t0033	2316	1	1	0	0	0	0	copy fasta	KDM4B	chr19	4964113	5158598
KDM4B_chr19_4964113_5158598	0/0	t0034	2314	1	0	0	0	0	1	copy fasta	KDM4B	chr19	4964113	5158598
KDM4B_chr19_4964113_5158598	0/0	t0035	2314	1	1	0	0	0	0	copy fasta	KDM4B	chr19	4964113	5158598
KDM4B_chr19_4964113_5158598	0/0	t0036	2315	1	1	0	0	0	0	copy fasta	KDM4B	chr19	4964113	5158598
KDM4C_chr9_6752973_7180648	0/0	t0001	1168	133	44	20	54	2	13	copy fasta	KDM4C	chr9	6752973	7180648
KDM4C_chr9_6752973_7180648	1/0	t0002	1168	96	25	20	36	2	12	copy fasta	KDM4C	chr9	6752973	7180648
KDM4C_chr9_6752973_7180648	0/0	t0003	1168	7	2	2	0	1	2	copy fasta	KDM4C	chr9	6752973	7180648
KDM4C_chr9_6752973_7180648	0/0	t0004	1168	7	7	0	0	0	0	copy fasta	KDM4C	chr9	6752973	7180648
KDM4C_chr9_6752973_7180648	0/0	t0005	1168	5	0	2	3	0	0	copy fasta	KDM4C	chr9	6752973	7180648