Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ANXA8L1_chr10_46370776_46396778	0/0	t0009	925	1	0	0	0	0	1	copy fasta	ANXA8L1	chr10	46370776	46396778
ANXA8L1_chr10_46370776_46396778	0/0	t0010	925	1	0	1	0	0	0	copy fasta	ANXA8L1	chr10	46370776	46396778
ANXA8L1_chr10_46370776_46396778	0/0	t0011	925	1	0	0	0	1	0	copy fasta	ANXA8L1	chr10	46370776	46396778
ANXA8L1_chr10_46370776_46396778	0/0	t0012	925	1	1	0	0	0	0	copy fasta	ANXA8L1	chr10	46370776	46396778
ANXA8L1_chr10_46370776_46396778	0/0	t0013	925	1	0	0	0	0	1	copy fasta	ANXA8L1	chr10	46370776	46396778
ANXA8L1_chr10_46370776_46396778	0/0	t0014	925	1	0	0	0	1	0	copy fasta	ANXA8L1	chr10	46370776	46396778
ANXA8L1_chr10_46370776_46396778	0/0	t0015	925	1	1	0	0	0	0	copy fasta	ANXA8L1	chr10	46370776	46396778
ANXA8L1_chr10_46370776_46396778	0/0	t0016	925	1	0	1	0	0	0	copy fasta	ANXA8L1	chr10	46370776	46396778
ANXA8L1_chr10_46370776_46396778	0/0	t0017	925	1	0	0	0	0	1	copy fasta	ANXA8L1	chr10	46370776	46396778
ANXA8L1_chr10_46370776_46396778	0/0	t0018	925	1	0	0	0	1	0	copy fasta	ANXA8L1	chr10	46370776	46396778
ANXA8_chr10_47462993_47489115	1/1	t0001	1037	269	64	47	115	15	26	copy fasta	ANXA8	chr10	47462993	47489115
ANXA8_chr10_47462993_47489115	0/0	t0002	1037	109	1	19	78	3	8	copy fasta	ANXA8	chr10	47462993	47489115
ANXA8_chr10_47462993_47489115	0/0	t0003	1037	11	0	0	11	0	0	copy fasta	ANXA8	chr10	47462993	47489115
ANXA8_chr10_47462993_47489115	0/0	t0004	1037	7	6	1	0	0	0	copy fasta	ANXA8	chr10	47462993	47489115
ANXA8_chr10_47462993_47489115	0/0	t0005	1037	7	7	0	0	0	0	copy fasta	ANXA8	chr10	47462993	47489115
ANXA8_chr10_47462993_47489115	0/0	t0006	1037	3	2	1	0	0	0	copy fasta	ANXA8	chr10	47462993	47489115
ANXA8_chr10_47462993_47489115	0/0	t0007	1037	2	2	0	0	0	0	copy fasta	ANXA8	chr10	47462993	47489115
ANXA8_chr10_47462993_47489115	0/0	t0008	1037	1	0	0	1	0	0	copy fasta	ANXA8	chr10	47462993	47489115
ANXA8_chr10_47462993_47489115	0/0	t0009	1037	1	1	0	0	0	0	copy fasta	ANXA8	chr10	47462993	47489115
ANXA8_chr10_47462993_47489115	0/0	t0010	1037	1	0	0	1	0	0	copy fasta	ANXA8	chr10	47462993	47489115
ANXA8_chr10_47462993_47489115	0/0	t0011	1037	1	1	0	0	0	0	copy fasta	ANXA8	chr10	47462993	47489115
ANXA9_chr1_150977292_151000634	1/1	t0001	514	393	89	76	162	18	46	copy fasta	ANXA9	chr1	150977292	151000634
ANXA9_chr1_150977292_151000634	0/0	t0002	514	3	3	0	0	0	0	copy fasta	ANXA9	chr1	150977292	151000634
ANXA9_chr1_150977292_151000634	0/0	t0003	514	2	0	0	2	0	0	copy fasta	ANXA9	chr1	150977292	151000634
AOAH_chr7_36507941_36729494	1/1	t0001	658	237	65	44	94	9	23	copy fasta	AOAH	chr7	36507941	36729494
AOAH_chr7_36507941_36729494	0/0	t0002	658	45	0	15	18	5	7	copy fasta	AOAH	chr7	36507941	36729494
AOAH_chr7_36507941_36729494	0/0	t0003	658	12	11	1	0	0	0	copy fasta	AOAH	chr7	36507941	36729494
AOAH_chr7_36507941_36729494	0/0	t0004	658	6	6	0	0	0	0	copy fasta	AOAH	chr7	36507941	36729494
AOAH_chr7_36507941_36729494	0/0	t0005	658	1	0	0	1	0	0	copy fasta	AOAH	chr7	36507941	36729494
AOAH_chr7_36507941_36729494	0/0	t0006	658	1	0	1	0	0	0	copy fasta	AOAH	chr7	36507941	36729494
AOAH_chr7_36507941_36729494	0/0	t0007	658	1	0	0	1	0	0	copy fasta	AOAH	chr7	36507941	36729494
AOAH_chr7_36507941_36729494	0/0	t0008	658	1	1	0	0	0	0	copy fasta	AOAH	chr7	36507941	36729494
AOAH_chr7_36507941_36729494	0/0	t0009	658	1	0	1	0	0	0	copy fasta	AOAH	chr7	36507941	36729494
AOAH_chr7_36507941_36729494	0/0	t0010	658	1	1	0	0	0	0	copy fasta	AOAH	chr7	36507941	36729494
AOC1_chr7_150847517_150866504	0/1	t0001	356	166	27	24	89	6	19	copy fasta	AOC1	chr7	150847517	150866504
AOC1_chr7_150847517_150866504	1/0	t0002	354	161	27	38	73	3	19	copy fasta	AOC1	chr7	150847517	150866504
AOC1_chr7_150847517_150866504	0/0	t0003	356	55	21	9	15	5	5	copy fasta	AOC1	chr7	150847517	150866504
AOC1_chr7_150847517_150866504	0/0	t0004	356	33	14	12	2	0	5	copy fasta	AOC1	chr7	150847517	150866504
AOC1_chr7_150847517_150866504	0/0	t0005	356	3	3	0	0	0	0	copy fasta	AOC1	chr7	150847517	150866504
AOC1_chr7_150847517_150866504	0/0	t0006	354	1	0	0	1	0	0	copy fasta	AOC1	chr7	150847517	150866504
AOC1_chr7_150847517_150866504	0/0	t0007	354	1	0	1	0	0	0	copy fasta	AOC1	chr7	150847517	150866504
AOC2_chr17_42839580_42855707	1/1	t0001	407	276	83	73	73	7	38	copy fasta	AOC2	chr17	42839580	42855707
AOC2_chr17_42839580_42855707	0/0	t0002	407	5	5	0	0	0	0	copy fasta	AOC2	chr17	42839580	42855707
AOC2_chr17_42839580_42855707	0/0	t0003	407	2	1	0	0	0	1	copy fasta	AOC2	chr17	42839580	42855707
AOC2_chr17_42839580_42855707	0/0	t0004	407	2	0	1	0	1	0	copy fasta	AOC2	chr17	42839580	42855707
AOC2_chr17_42839580_42855707	0/0	t0005	407	1	0	0	1	0	0	copy fasta	AOC2	chr17	42839580	42855707
AOC2_chr17_42839580_42855707	0/0	t0006	407	1	0	0	0	0	1	copy fasta	AOC2	chr17	42839580	42855707
AOC2_chr17_42839580_42855707	0/0	t0007	407	1	1	0	0	0	0	copy fasta	AOC2	chr17	42839580	42855707
AOC2_chr17_42839580_42855707	0/0	t0008	407	1	1	0	0	0	0	copy fasta	AOC2	chr17	42839580	42855707
AOC2_chr17_42839580_42855707	0/0	t0009	407	1	1	0	0	0	0	copy fasta	AOC2	chr17	42839580	42855707