JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KDM5C_chrX_53187158_53230207	0/0	t0008	1128	1	1	0	0	0	0	copy fasta	KDM5C	chrX	53187158	53230207
KDM5D_chrY_19698865_19749726	0/1	t0001	2206	100	16	10	64	3	6	copy fasta	KDM5D	chrY	19698865	19749726
KDM5D_chrY_19698865_19749726	1/0	t0002	2206	22	0	9	1	2	9	copy fasta	KDM5D	chrY	19698865	19749726
KDM5D_chrY_19698865_19749726	0/0	t0003	2206	4	0	0	4	0	0	copy fasta	KDM5D	chrY	19698865	19749726
KDM5D_chrY_19698865_19749726	0/0	t0004	2205	1	0	0	1	0	0	copy fasta	KDM5D	chrY	19698865	19749726
KDM5D_chrY_19698865_19749726	0/0	t0005	2207	1	1	0	0	0	0	copy fasta	KDM5D	chrY	19698865	19749726
KDM5D_chrY_19698865_19749726	0/0	t0006	2206	1	0	1	0	0	0	copy fasta	KDM5D	chrY	19698865	19749726
KDM5D_chrY_19698865_19749726	0/0	t0007	2206	1	1	0	0	0	0	copy fasta	KDM5D	chrY	19698865	19749726
KDM5D_chrY_19698865_19749726	0/0	t0008	2206	1	0	0	0	0	1	copy fasta	KDM5D	chrY	19698865	19749726
KDM6A_chrX_44868188_45117779	1/1	t0001	1733	164	43	23	74	6	16	copy fasta	KDM6A	chrX	44868188	45117779
KDM6A_chrX_44868188_45117779	0/0	t0002	1736	26	15	5	2	1	3	copy fasta	KDM6A	chrX	44868188	45117779
KDM6A_chrX_44868188_45117779	0/0	t0003	1733	3	3	0	0	0	0	copy fasta	KDM6A	chrX	44868188	45117779
KDM6A_chrX_44868188_45117779	0/0	t0004	1734	2	1	0	1	0	0	copy fasta	KDM6A	chrX	44868188	45117779
KDM6A_chrX_44868188_45117779	0/0	t0005	1733	1	0	0	0	0	1	copy fasta	KDM6A	chrX	44868188	45117779
KDM6A_chrX_44868188_45117779	0/0	t0006	1736	1	0	1	0	0	0	copy fasta	KDM6A	chrX	44868188	45117779
KDM6A_chrX_44868188_45117779	0/0	t0007	1733	1	1	0	0	0	0	copy fasta	KDM6A	chrX	44868188	45117779
KDM6A_chrX_44868188_45117779	0/0	t0008	1733	1	0	0	1	0	0	copy fasta	KDM6A	chrX	44868188	45117779
KDM6B_chr17_7829217_7859796	0/0	t0001	1798	163	36	23	90	0	14	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	1/0	t0002	1797	97	23	15	43	2	13	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/1	t0003	1799	45	6	20	0	10	8	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	t0004	1797	33	1	7	16	4	5	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	t0005	1797	9	9	0	0	0	0	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	t0006	1798	7	6	1	0	0	0	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	t0007	1798	5	4	1	0	0	0	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	t0008	1797	4	4	0	0	0	0	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	t0009	1799	4	1	1	0	1	1	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	t0010	1798	3	3	0	0	0	0	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	t0011	1797	2	2	0	0	0	0	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	t0012	1799	2	0	2	0	0	0	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	t0013	1798	1	0	0	1	0	0	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	t0014	1797	1	0	0	0	0	1	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	t0015	1799	1	0	0	1	0	0	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	t0016	1798	1	0	0	0	1	0	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	t0017	1797	1	0	0	0	0	1	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	t0018	1797	1	0	0	0	0	1	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	t0019	1798	1	1	0	0	0	0	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	t0020	1799	1	0	1	0	0	0	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	t0021	1798	1	1	0	0	0	0	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	t0022	1798	1	0	0	1	0	0	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	t0023	1800	1	0	1	0	0	0	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	t0024	1797	1	1	0	0	0	0	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	t0025	1797	1	0	1	0	0	0	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	t0026	1797	1	0	1	0	0	0	copy fasta	KDM6B	chr17	7829217	7859796
KDM7A_chr7_140079746_140181983	0/0	t0001	6395	89	23	15	42	0	9	copy fasta	KDM7A	chr7	140079746	140181983
KDM7A_chr7_140079746_140181983	0/0	t0002	6395	82	7	16	45	5	9	copy fasta	KDM7A	chr7	140079746	140181983
KDM7A_chr7_140079746_140181983	0/0	t0003	6391	43	2	13	19	1	8	copy fasta	KDM7A	chr7	140079746	140181983
KDM7A_chr7_140079746_140181983	0/0	t0004	6394	29	0	1	27	0	1	copy fasta	KDM7A	chr7	140079746	140181983
KDM7A_chr7_140079746_140181983	0/0	t0005	6391	17	15	2	0	0	0	copy fasta	KDM7A	chr7	140079746	140181983
KDM7A_chr7_140079746_140181983	0/0	t0006	6394	9	7	2	0	0	0	copy fasta	KDM7A	chr7	140079746	140181983
KDM7A_chr7_140079746_140181983	0/1	t0007	6394	7	2	3	0	1	0	copy fasta	KDM7A	chr7	140079746	140181983