JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KDM7A_chr7_140079746_140181983	0/0	t0008	6394	7	0	3	0	2	2	copy fasta	KDM7A	chr7	140079746	140181983
KDM7A_chr7_140079746_140181983	0/0	t0009	6395	6	0	0	6	0	0	copy fasta	KDM7A	chr7	140079746	140181983
KDM7A_chr7_140079746_140181983	0/0	t0010	6395	6	0	0	6	0	0	copy fasta	KDM7A	chr7	140079746	140181983
KDM7A_chr7_140079746_140181983	0/0	t0011	6391	4	4	0	0	0	0	copy fasta	KDM7A	chr7	140079746	140181983
KDM7A_chr7_140079746_140181983	0/0	t0012	6395	3	3	0	0	0	0	copy fasta	KDM7A	chr7	140079746	140181983
KDM7A_chr7_140079746_140181983	0/0	t0013	6391	3	3	0	0	0	0	copy fasta	KDM7A	chr7	140079746	140181983
KDM7A_chr7_140079746_140181983	0/0	t0014	6391	3	3	0	0	0	0	copy fasta	KDM7A	chr7	140079746	140181983
KDM7A_chr7_140079746_140181983	0/0	t0015	6394	3	1	1	0	0	1	copy fasta	KDM7A	chr7	140079746	140181983
KDM7A_chr7_140079746_140181983	0/0	t0016	6391	3	3	0	0	0	0	copy fasta	KDM7A	chr7	140079746	140181983
KDM7A_chr7_140079746_140181983	0/0	t0017	6395	3	3	0	0	0	0	copy fasta	KDM7A	chr7	140079746	140181983
KDM7A_chr7_140079746_140181983	0/0	t0018	6391	2	0	2	0	0	0	copy fasta	KDM7A	chr7	140079746	140181983
KDM7A_chr7_140079746_140181983	0/0	t0019	6395	2	2	0	0	0	0	copy fasta	KDM7A	chr7	140079746	140181983
KDM7A_chr7_140079746_140181983	0/0	t0020	6394	2	0	0	0	2	0	copy fasta	KDM7A	chr7	140079746	140181983
KDM7A_chr7_140079746_140181983	0/0	t0021	6395	2	0	1	0	0	1	copy fasta	KDM7A	chr7	140079746	140181983
KDM7A_chr7_140079746_140181983	0/0	t0022	6391	1	1	0	0	0	0	copy fasta	KDM7A	chr7	140079746	140181983
KDM7A_chr7_140079746_140181983	0/0	t0023	6395	1	0	0	1	0	0	copy fasta	KDM7A	chr7	140079746	140181983
KDM7A_chr7_140079746_140181983	0/0	t0024	6395	1	1	0	0	0	0	copy fasta	KDM7A	chr7	140079746	140181983
KDM7A_chr7_140079746_140181983	0/0	t0025	6395	1	0	0	1	0	0	copy fasta	KDM7A	chr7	140079746	140181983
KDM7A_chr7_140079746_140181983	0/0	t0026	6391	1	1	0	0	0	0	copy fasta	KDM7A	chr7	140079746	140181983
KDM7A_chr7_140079746_140181983	0/0	t0027	6391	1	0	0	0	0	1	copy fasta	KDM7A	chr7	140079746	140181983
KDM7A_chr7_140079746_140181983	0/0	t0028	6395	1	1	0	0	0	0	copy fasta	KDM7A	chr7	140079746	140181983
KDM7A_chr7_140079746_140181983	0/0	t0029	6395	1	1	0	0	0	0	copy fasta	KDM7A	chr7	140079746	140181983
KDM7A_chr7_140079746_140181983	0/0	t0030	6395	1	0	0	0	0	1	copy fasta	KDM7A	chr7	140079746	140181983
KDM7A_chr7_140079746_140181983	0/0	t0031	6395	1	0	0	0	0	1	copy fasta	KDM7A	chr7	140079746	140181983
KDM7A_chr7_140079746_140181983	1/0	t0032	6395	1	0	0	0	0	0	copy fasta	KDM7A	chr7	140079746	140181983
KDM7A_chr7_140079746_140181983	0/0	t0033	6395	1	0	0	0	1	0	copy fasta	KDM7A	chr7	140079746	140181983
KDM7A_chr7_140079746_140181983	0/0	t0034	6395	1	1	0	0	0	0	copy fasta	KDM7A	chr7	140079746	140181983
KDM7A_chr7_140079746_140181983	0/0	t0035	6395	1	0	1	0	0	0	copy fasta	KDM7A	chr7	140079746	140181983
KDM7A_chr7_140079746_140181983	0/0	t0036	6395	1	0	0	1	0	0	copy fasta	KDM7A	chr7	140079746	140181983
KDM7A_chr7_140079746_140181983	0/0	t0037	6395	1	1	0	0	0	0	copy fasta	KDM7A	chr7	140079746	140181983
KDM7A_chr7_140079746_140181983	0/0	t0038	6395	1	0	0	1	0	0	copy fasta	KDM7A	chr7	140079746	140181983
KDM7A_chr7_140079746_140181983	0/0	t0039	6394	1	1	0	0	0	0	copy fasta	KDM7A	chr7	140079746	140181983
KDM7A_chr7_140079746_140181983	0/0	t0040	6395	1	0	0	1	0	0	copy fasta	KDM7A	chr7	140079746	140181983
KDM8_chr16_27198526_27226768	1/1	t0001	1181	121	48	30	20	4	17	copy fasta	KDM8	chr16	27198526	27226768
KDM8_chr16_27198526_27226768	0/0	t0002	1181	120	7	24	77	2	10	copy fasta	KDM8	chr16	27198526	27226768
KDM8_chr16_27198526_27226768	0/0	t0003	1181	112	1	19	70	6	16	copy fasta	KDM8	chr16	27198526	27226768
KDM8_chr16_27198526_27226768	0/0	t0004	1181	9	6	0	0	0	3	copy fasta	KDM8	chr16	27198526	27226768
KDM8_chr16_27198526_27226768	0/0	t0005	1181	8	8	0	0	0	0	copy fasta	KDM8	chr16	27198526	27226768
KDM8_chr16_27198526_27226768	0/0	t0006	1181	7	7	0	0	0	0	copy fasta	KDM8	chr16	27198526	27226768
KDM8_chr16_27198526_27226768	0/0	t0007	1181	7	6	1	0	0	0	copy fasta	KDM8	chr16	27198526	27226768
KDM8_chr16_27198526_27226768	0/0	t0008	1181	6	6	0	0	0	0	copy fasta	KDM8	chr16	27198526	27226768
KDM8_chr16_27198526_27226768	0/0	t0009	1181	3	3	0	0	0	0	copy fasta	KDM8	chr16	27198526	27226768
KDM8_chr16_27198526_27226768	0/0	t0010	1181	2	0	0	2	0	0	copy fasta	KDM8	chr16	27198526	27226768
KDM8_chr16_27198526_27226768	0/0	t0011	1181	2	2	0	0	0	0	copy fasta	KDM8	chr16	27198526	27226768
KDM8_chr16_27198526_27226768	0/0	t0012	1181	2	2	0	0	0	0	copy fasta	KDM8	chr16	27198526	27226768
KDM8_chr16_27198526_27226768	0/0	t0013	1181	1	0	0	1	0	0	copy fasta	KDM8	chr16	27198526	27226768
KDM8_chr16_27198526_27226768	0/0	t0014	1181	1	0	0	1	0	0	copy fasta	KDM8	chr16	27198526	27226768
KDM8_chr16_27198526_27226768	0/0	t0015	1181	1	0	0	1	0	0	copy fasta	KDM8	chr16	27198526	27226768
KDR_chr4_55073481_55130595	0/0	t0001	1763	211	25	49	110	7	20	copy fasta	KDR	chr4	55073481	55130595
KDR_chr4_55073481_55130595	0/1	t0002	1763	133	44	21	42	6	19	copy fasta	KDR	chr4	55073481	55130595