JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KDR_chr4_55073481_55130595	0/0	t0003	1762	12	9	0	1	0	2	copy fasta	KDR	chr4	55073481	55130595
KDR_chr4_55073481_55130595	0/0	t0004	1762	10	0	0	9	0	1	copy fasta	KDR	chr4	55073481	55130595
KDR_chr4_55073481_55130595	0/0	t0005	1762	7	3	0	4	0	0	copy fasta	KDR	chr4	55073481	55130595
KDR_chr4_55073481_55130595	0/0	t0006	1763	3	3	0	0	0	0	copy fasta	KDR	chr4	55073481	55130595
KDR_chr4_55073481_55130595	0/0	t0007	1762	3	0	1	2	0	0	copy fasta	KDR	chr4	55073481	55130595
KDR_chr4_55073481_55130595	0/0	t0008	1762	2	0	0	0	0	2	copy fasta	KDR	chr4	55073481	55130595
KDR_chr4_55073481_55130595	0/0	t0009	1763	2	0	0	2	0	0	copy fasta	KDR	chr4	55073481	55130595
KDR_chr4_55073481_55130595	1/0	t0010	1763	2	0	1	0	0	0	copy fasta	KDR	chr4	55073481	55130595
KDR_chr4_55073481_55130595	0/0	t0011	1763	2	1	0	0	0	1	copy fasta	KDR	chr4	55073481	55130595
KDR_chr4_55073481_55130595	0/0	t0012	1763	1	1	0	0	0	0	copy fasta	KDR	chr4	55073481	55130595
KDR_chr4_55073481_55130595	0/0	t0013	1763	1	0	0	0	0	1	copy fasta	KDR	chr4	55073481	55130595
KDR_chr4_55073481_55130595	0/0	t0014	1762	1	1	0	0	0	0	copy fasta	KDR	chr4	55073481	55130595
KDR_chr4_55073481_55130595	0/0	t0015	1763	1	1	0	0	0	0	copy fasta	KDR	chr4	55073481	55130595
KDR_chr4_55073481_55130595	0/0	t0016	1763	1	0	0	1	0	0	copy fasta	KDR	chr4	55073481	55130595
KDR_chr4_55073481_55130595	0/0	t0017	1763	1	0	0	1	0	0	copy fasta	KDR	chr4	55073481	55130595
KDR_chr4_55073481_55130595	0/0	t0018	1763	1	0	0	1	0	0	copy fasta	KDR	chr4	55073481	55130595
KDR_chr4_55073481_55130595	0/0	t0019	1763	1	1	0	0	0	0	copy fasta	KDR	chr4	55073481	55130595
KDR_chr4_55073481_55130595	0/0	t0020	1763	1	0	0	0	1	0	copy fasta	KDR	chr4	55073481	55130595
KDR_chr4_55073481_55130595	0/0	t0021	1763	1	0	0	1	0	0	copy fasta	KDR	chr4	55073481	55130595
KDR_chr4_55073481_55130595	0/0	t0022	1763	1	1	0	0	0	0	copy fasta	KDR	chr4	55073481	55130595
KDSR_chr18_63322726_63372206	0/0	t0001	4137	104	14	22	48	3	17	copy fasta	KDSR	chr18	63322726	63372206
KDSR_chr18_63322726_63372206	0/1	t0002	4138	56	1	22	19	6	7	copy fasta	KDSR	chr18	63322726	63372206
KDSR_chr18_63322726_63372206	0/0	t0003	4136	39	1	1	37	0	0	copy fasta	KDSR	chr18	63322726	63372206
KDSR_chr18_63322726_63372206	1/0	t0004	4145	36	0	2	28	1	4	copy fasta	KDSR	chr18	63322726	63372206
KDSR_chr18_63322726_63372206	0/0	t0005	4137	21	16	1	3	0	1	copy fasta	KDSR	chr18	63322726	63372206
KDSR_chr18_63322726_63372206	0/0	t0006	4136	16	0	7	9	0	0	copy fasta	KDSR	chr18	63322726	63372206
KDSR_chr18_63322726_63372206	0/0	t0007	4128	16	9	5	2	0	0	copy fasta	KDSR	chr18	63322726	63372206
KDSR_chr18_63322726_63372206	0/0	t0008	4145	14	13	1	0	0	0	copy fasta	KDSR	chr18	63322726	63372206
KDSR_chr18_63322726_63372206	0/0	t0009	4134	12	1	3	1	0	7	copy fasta	KDSR	chr18	63322726	63372206
KDSR_chr18_63322726_63372206	0/0	t0010	4145	10	8	0	1	0	1	copy fasta	KDSR	chr18	63322726	63372206
KDSR_chr18_63322726_63372206	0/0	t0011	4128	8	0	5	1	0	2	copy fasta	KDSR	chr18	63322726	63372206
KDSR_chr18_63322726_63372206	0/0	t0012	4146	6	0	0	6	0	0	copy fasta	KDSR	chr18	63322726	63372206
KDSR_chr18_63322726_63372206	0/0	t0013	4145	5	4	1	0	0	0	copy fasta	KDSR	chr18	63322726	63372206
KDSR_chr18_63322726_63372206	0/0	t0014	4137	5	0	0	5	0	0	copy fasta	KDSR	chr18	63322726	63372206
KDSR_chr18_63322726_63372206	0/0	t0015	4146	5	5	0	0	0	0	copy fasta	KDSR	chr18	63322726	63372206
KDSR_chr18_63322726_63372206	0/0	t0016	4128	5	0	5	0	0	0	copy fasta	KDSR	chr18	63322726	63372206
KDSR_chr18_63322726_63372206	0/0	t0017	4128	4	4	0	0	0	0	copy fasta	KDSR	chr18	63322726	63372206
KDSR_chr18_63322726_63372206	0/0	t0018	4139	2	0	0	0	0	2	copy fasta	KDSR	chr18	63322726	63372206
KDSR_chr18_63322726_63372206	0/0	t0019	4146	2	0	0	2	0	0	copy fasta	KDSR	chr18	63322726	63372206
KDSR_chr18_63322726_63372206	0/0	t0020	4136	2	0	0	2	0	0	copy fasta	KDSR	chr18	63322726	63372206
KDSR_chr18_63322726_63372206	0/0	t0021	4136	2	0	1	0	1	0	copy fasta	KDSR	chr18	63322726	63372206
KDSR_chr18_63322726_63372206	0/0	t0022	4137	1	0	0	1	0	0	copy fasta	KDSR	chr18	63322726	63372206
KDSR_chr18_63322726_63372206	0/0	t0023	4144	1	0	1	0	0	0	copy fasta	KDSR	chr18	63322726	63372206
KDSR_chr18_63322726_63372206	0/0	t0024	4144	1	0	0	1	0	0	copy fasta	KDSR	chr18	63322726	63372206
KDSR_chr18_63322726_63372206	0/0	t0025	4138	1	0	1	0	0	0	copy fasta	KDSR	chr18	63322726	63372206
KDSR_chr18_63322726_63372206	0/0	t0026	4129	1	1	0	0	0	0	copy fasta	KDSR	chr18	63322726	63372206
KDSR_chr18_63322726_63372206	0/0	t0027	4144	1	0	0	1	0	0	copy fasta	KDSR	chr18	63322726	63372206
KDSR_chr18_63322726_63372206	0/0	t0028	4144	1	0	0	1	0	0	copy fasta	KDSR	chr18	63322726	63372206
KDSR_chr18_63322726_63372206	0/0	t0029	4138	1	0	0	1	0	0	copy fasta	KDSR	chr18	63322726	63372206
KDSR_chr18_63322726_63372206	0/0	t0030	4137	1	0	0	0	0	1	copy fasta	KDSR	chr18	63322726	63372206