JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KDSR_chr18_63322726_63372206	0/0	t0031	4138	1	0	0	1	0	0	copy fasta	KDSR	chr18	63322726	63372206
KDSR_chr18_63322726_63372206	0/0	t0032	4133	1	0	1	0	0	0	copy fasta	KDSR	chr18	63322726	63372206
KDSR_chr18_63322726_63372206	0/0	t0033	4146	1	0	0	1	0	0	copy fasta	KDSR	chr18	63322726	63372206
KDSR_chr18_63322726_63372206	0/0	t0034	4145	1	0	0	1	0	0	copy fasta	KDSR	chr18	63322726	63372206
KDSR_chr18_63322726_63372206	0/0	t0035	4146	1	0	0	1	0	0	copy fasta	KDSR	chr18	63322726	63372206
KDSR_chr18_63322726_63372206	0/0	t0036	4128	1	0	0	1	0	0	copy fasta	KDSR	chr18	63322726	63372206
KDSR_chr18_63322726_63372206	0/0	t0037	4138	1	0	1	0	0	0	copy fasta	KDSR	chr18	63322726	63372206
KDSR_chr18_63322726_63372206	0/0	t0038	4136	1	0	0	1	0	0	copy fasta	KDSR	chr18	63322726	63372206
KDSR_chr18_63322726_63372206	0/0	t0039	4138	1	0	1	0	0	0	copy fasta	KDSR	chr18	63322726	63372206
KDSR_chr18_63322726_63372206	0/0	t0040	4145	1	0	0	1	0	0	copy fasta	KDSR	chr18	63322726	63372206
KDSR_chr18_63322726_63372206	0/0	t0041	4138	1	0	0	1	0	0	copy fasta	KDSR	chr18	63322726	63372206
KDSR_chr18_63322726_63372206	0/0	t0042	4137	1	1	0	0	0	0	copy fasta	KDSR	chr18	63322726	63372206
KDSR_chr18_63322726_63372206	0/0	t0043	4130	1	1	0	0	0	0	copy fasta	KDSR	chr18	63322726	63372206
KDSR_chr18_63322726_63372206	0/0	t0044	4136	1	1	0	0	0	0	copy fasta	KDSR	chr18	63322726	63372206
KDSR_chr18_63322726_63372206	0/0	t0045	4146	1	0	0	1	0	0	copy fasta	KDSR	chr18	63322726	63372206
KDSR_chr18_63322726_63372206	0/0	t0046	4145	1	0	0	0	1	0	copy fasta	KDSR	chr18	63322726	63372206
KDSR_chr18_63322726_63372206	0/0	t0047	4128	1	1	0	0	0	0	copy fasta	KDSR	chr18	63322726	63372206
KDSR_chr18_63322726_63372206	0/0	t0048	4130	1	1	0	0	0	0	copy fasta	KDSR	chr18	63322726	63372206
KDSR_chr18_63322726_63372206	0/0	t0049	4128	1	0	1	0	0	0	copy fasta	KDSR	chr18	63322726	63372206
KDSR_chr18_63322726_63372206	0/0	t0050	4128	1	1	0	0	0	0	copy fasta	KDSR	chr18	63322726	63372206
KDSR_chr18_63322726_63372206	0/0	t0051	4128	1	0	0	1	0	0	copy fasta	KDSR	chr18	63322726	63372206
KDSR_chr18_63322726_63372206	0/0	t0052	4129	1	0	0	1	0	0	copy fasta	KDSR	chr18	63322726	63372206
KDSR_chr18_63322726_63372206	0/0	t0053	4136	1	0	0	1	0	0	copy fasta	KDSR	chr18	63322726	63372206
KDSR_chr18_63322726_63372206	0/0	t0054	4136	1	0	0	1	0	0	copy fasta	KDSR	chr18	63322726	63372206
KDSR_chr18_63322726_63372206	0/0	t0055	4137	1	0	1	0	0	0	copy fasta	KDSR	chr18	63322726	63372206
KDSR_chr18_63322726_63372206	0/0	t0056	4144	1	1	0	0	0	0	copy fasta	KDSR	chr18	63322726	63372206
KDSR_chr18_63322726_63372206	0/0	t0057	4137	1	0	1	0	0	0	copy fasta	KDSR	chr18	63322726	63372206
KEAP1_chr19_10481125_10508356	1/1	t0001	691	328	77	63	142	13	31	copy fasta	KEAP1	chr19	10481125	10508356
KEAP1_chr19_10481125_10508356	0/0	t0002	691	28	8	6	2	0	12	copy fasta	KEAP1	chr19	10481125	10508356
KEAP1_chr19_10481125_10508356	0/0	t0003	691	12	0	0	12	0	0	copy fasta	KEAP1	chr19	10481125	10508356
KEAP1_chr19_10481125_10508356	0/0	t0004	691	11	2	0	9	0	0	copy fasta	KEAP1	chr19	10481125	10508356
KEAP1_chr19_10481125_10508356	0/0	t0005	691	10	9	1	0	0	0	copy fasta	KEAP1	chr19	10481125	10508356
KEAP1_chr19_10481125_10508356	0/0	t0006	691	1	0	0	1	0	0	copy fasta	KEAP1	chr19	10481125	10508356
KEAP1_chr19_10481125_10508356	0/0	t0007	691	1	0	0	0	1	0	copy fasta	KEAP1	chr19	10481125	10508356
KEAP1_chr19_10481125_10508356	0/0	t0008	691	1	0	0	0	0	1	copy fasta	KEAP1	chr19	10481125	10508356
KEL_chr7_142936114_142967363	0/1	t0001	296	253	94	58	58	14	28	copy fasta	KEL	chr7	142936114	142967363
KERA_chr12_91045491_91063024	0/0	t0001	1145	262	34	62	125	14	27	copy fasta	KERA	chr12	91045491	91063024
KERA_chr12_91045491_91063024	0/0	t0002	1145	46	2	7	29	0	8	copy fasta	KERA	chr12	91045491	91063024
KERA_chr12_91045491_91063024	0/1	t0003	1144	37	16	3	15	0	2	copy fasta	KERA	chr12	91045491	91063024
KERA_chr12_91045491_91063024	0/0	t0004	1145	29	23	5	0	0	1	copy fasta	KERA	chr12	91045491	91063024
KERA_chr12_91045491_91063024	0/0	t0005	1145	11	9	2	0	0	0	copy fasta	KERA	chr12	91045491	91063024
KERA_chr12_91045491_91063024	1/0	t0006	1145	5	3	1	0	0	0	copy fasta	KERA	chr12	91045491	91063024
KERA_chr12_91045491_91063024	0/0	t0007	1144	3	3	0	0	0	0	copy fasta	KERA	chr12	91045491	91063024
KERA_chr12_91045491_91063024	0/0	t0008	1145	3	3	0	0	0	0	copy fasta	KERA	chr12	91045491	91063024
KERA_chr12_91045491_91063024	0/0	t0009	1145	2	2	0	0	0	0	copy fasta	KERA	chr12	91045491	91063024
KERA_chr12_91045491_91063024	0/0	t0010	1145	2	0	2	0	0	0	copy fasta	KERA	chr12	91045491	91063024
KERA_chr12_91045491_91063024	0/0	t0011	1144	1	1	0	0	0	0	copy fasta	KERA	chr12	91045491	91063024
KERA_chr12_91045491_91063024	0/0	t0012	1144	1	0	1	0	0	0	copy fasta	KERA	chr12	91045491	91063024
KERA_chr12_91045491_91063024	0/0	t0013	1145	1	1	0	0	0	0	copy fasta	KERA	chr12	91045491	91063024
KERA_chr12_91045491_91063024	0/0	t0014	1145	1	0	0	1	0	0	copy fasta	KERA	chr12	91045491	91063024