JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KERA_chr12_91045491_91063024	0/0	t0015	1145	1	0	1	0	0	0	copy fasta	KERA	chr12	91045491	91063024
KERA_chr12_91045491_91063024	0/0	t0016	1131	1	0	0	1	0	0	copy fasta	KERA	chr12	91045491	91063024
KERA_chr12_91045491_91063024	0/0	t0017	1145	1	0	0	1	0	0	copy fasta	KERA	chr12	91045491	91063024
KERA_chr12_91045491_91063024	0/0	t0018	1145	1	1	0	0	0	0	copy fasta	KERA	chr12	91045491	91063024
KHDC1L_chr6_73218544_73230496	1/1	t0001	293	283	51	51	134	9	36	copy fasta	KHDC1L	chr6	73218544	73230496
KHDC1L_chr6_73218544_73230496	0/0	t0002	293	79	13	11	50	2	3	copy fasta	KHDC1L	chr6	73218544	73230496
KHDC1L_chr6_73218544_73230496	0/0	t0003	293	51	26	7	12	1	5	copy fasta	KHDC1L	chr6	73218544	73230496
KHDC1L_chr6_73218544_73230496	0/0	t0004	293	3	3	0	0	0	0	copy fasta	KHDC1L	chr6	73218544	73230496
KHDC1L_chr6_73218544_73230496	0/0	t0005	293	2	2	0	0	0	0	copy fasta	KHDC1L	chr6	73218544	73230496
KHDC1L_chr6_73218544_73230496	0/0	t0006	293	1	0	1	0	0	0	copy fasta	KHDC1L	chr6	73218544	73230496
KHDC1L_chr6_73218544_73230496	0/0	t0007	205	1	1	0	0	0	0	copy fasta	KHDC1L	chr6	73218544	73230496
KHDC1_chr6_73236314_73268196	0/1	t0001	637	172	30	31	75	7	28	copy fasta	KHDC1	chr6	73236314	73268196
KHDC1_chr6_73236314_73268196	1/0	t0002	652	128	55	19	44	1	8	copy fasta	KHDC1	chr6	73236314	73268196
KHDC1_chr6_73236314_73268196	0/0	t0003	664	7	0	3	4	0	0	copy fasta	KHDC1	chr6	73236314	73268196
KHDC1_chr6_73236314_73268196	0/0	t0004	655	5	2	0	3	0	0	copy fasta	KHDC1	chr6	73236314	73268196
KHDC1_chr6_73236314_73268196	0/0	t0005	655	5	5	0	0	0	0	copy fasta	KHDC1	chr6	73236314	73268196
KHDC1_chr6_73236314_73268196	0/0	t0006	637	4	4	0	0	0	0	copy fasta	KHDC1	chr6	73236314	73268196
KHDC1_chr6_73236314_73268196	0/0	t0007	637	3	0	1	0	2	0	copy fasta	KHDC1	chr6	73236314	73268196
KHDC1_chr6_73236314_73268196	0/0	t0008	652	1	1	0	0	0	0	copy fasta	KHDC1	chr6	73236314	73268196
KHDC1_chr6_73236314_73268196	0/0	t0009	652	1	1	0	0	0	0	copy fasta	KHDC1	chr6	73236314	73268196
KHDC3L_chr6_73357658_73369171	1/1	t0001	384	415	90	73	197	18	35	copy fasta	KHDC3L	chr6	73357658	73369171
KHDC3L_chr6_73357658_73369171	0/0	t0002	384	18	2	5	6	0	5	copy fasta	KHDC3L	chr6	73357658	73369171
KHDC3L_chr6_73357658_73369171	0/0	t0003	384	1	0	0	1	0	0	copy fasta	KHDC3L	chr6	73357658	73369171
KHDC4_chr1_155908045_155939413	0/0	t0001	1117	240	39	47	118	9	27	copy fasta	KHDC4	chr1	155908045	155939413
KHDC4_chr1_155908045_155939413	1/1	t0002	1117	86	55	5	16	1	7	copy fasta	KHDC4	chr1	155908045	155939413
KHDRBS1_chr1_32008868_32048877	1/1	t0001	1382	236	54	42	101	12	25	copy fasta	KHDRBS1	chr1	32008868	32048877
KHDRBS1_chr1_32008868_32048877	0/0	t0002	1381	11	10	1	0	0	0	copy fasta	KHDRBS1	chr1	32008868	32048877
KHDRBS1_chr1_32008868_32048877	0/0	t0003	1382	7	0	2	5	0	0	copy fasta	KHDRBS1	chr1	32008868	32048877
KHDRBS1_chr1_32008868_32048877	0/0	t0004	1378	4	4	0	0	0	0	copy fasta	KHDRBS1	chr1	32008868	32048877
KHDRBS1_chr1_32008868_32048877	0/0	t0005	1382	3	3	0	0	0	0	copy fasta	KHDRBS1	chr1	32008868	32048877
KHDRBS1_chr1_32008868_32048877	0/0	t0006	1383	3	1	2	0	0	0	copy fasta	KHDRBS1	chr1	32008868	32048877
KHDRBS1_chr1_32008868_32048877	0/0	t0007	1381	2	0	2	0	0	0	copy fasta	KHDRBS1	chr1	32008868	32048877
KHDRBS1_chr1_32008868_32048877	0/0	t0008	1382	1	0	0	0	0	1	copy fasta	KHDRBS1	chr1	32008868	32048877
KHDRBS1_chr1_32008868_32048877	0/0	t0009	1382	1	0	1	0	0	0	copy fasta	KHDRBS1	chr1	32008868	32048877
KHDRBS1_chr1_32008868_32048877	0/0	t0010	1381	1	0	0	1	0	0	copy fasta	KHDRBS1	chr1	32008868	32048877
KHDRBS1_chr1_32008868_32048877	0/0	t0011	1382	1	1	0	0	0	0	copy fasta	KHDRBS1	chr1	32008868	32048877
KHDRBS1_chr1_32008868_32048877	0/0	t0012	1382	1	0	0	1	0	0	copy fasta	KHDRBS1	chr1	32008868	32048877
KHDRBS1_chr1_32008868_32048877	0/0	t0013	1379	1	1	0	0	0	0	copy fasta	KHDRBS1	chr1	32008868	32048877
KHDRBS2_chr6_61674961_62291225	0/0	t0001	1281	63	14	6	35	5	3	copy fasta	KHDRBS2	chr6	61674961	62291225
KHDRBS2_chr6_61674961_62291225	1/1	t0002	1280	51	5	6	29	3	6	copy fasta	KHDRBS2	chr6	61674961	62291225
KHDRBS2_chr6_61674961_62291225	0/0	t0003	1279	35	20	10	2	1	2	copy fasta	KHDRBS2	chr6	61674961	62291225
KHDRBS2_chr6_61674961_62291225	0/0	t0004	1280	35	15	1	13	1	5	copy fasta	KHDRBS2	chr6	61674961	62291225
KHDRBS2_chr6_61674961_62291225	0/0	t0005	1281	16	1	1	4	2	8	copy fasta	KHDRBS2	chr6	61674961	62291225
KHDRBS2_chr6_61674961_62291225	0/0	t0006	1281	14	7	0	5	0	2	copy fasta	KHDRBS2	chr6	61674961	62291225
KHDRBS2_chr6_61674961_62291225	0/0	t0007	1279	9	6	0	0	2	1	copy fasta	KHDRBS2	chr6	61674961	62291225
KHDRBS2_chr6_61674961_62291225	0/0	t0008	1281	7	0	0	5	0	2	copy fasta	KHDRBS2	chr6	61674961	62291225
KHDRBS2_chr6_61674961_62291225	0/0	t0009	1281	4	4	0	0	0	0	copy fasta	KHDRBS2	chr6	61674961	62291225
KHDRBS2_chr6_61674961_62291225	0/0	t0010	1279	2	2	0	0	0	0	copy fasta	KHDRBS2	chr6	61674961	62291225
KHDRBS2_chr6_61674961_62291225	0/0	t0011	1280	1	1	0	0	0	0	copy fasta	KHDRBS2	chr6	61674961	62291225
KHDRBS2_chr6_61674961_62291225	0/0	t0012	1281	1	0	0	0	0	1	copy fasta	KHDRBS2	chr6	61674961	62291225