JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KHDRBS2_chr6_61674961_62291225	0/0	t0013	1279	1	1	0	0	0	0	copy fasta	KHDRBS2	chr6	61674961	62291225
KHDRBS2_chr6_61674961_62291225	0/0	t0014	1280	1	0	0	1	0	0	copy fasta	KHDRBS2	chr6	61674961	62291225
KHDRBS2_chr6_61674961_62291225	0/0	t0015	1281	1	1	0	0	0	0	copy fasta	KHDRBS2	chr6	61674961	62291225
KHDRBS2_chr6_61674961_62291225	0/0	t0016	1282	1	0	0	1	0	0	copy fasta	KHDRBS2	chr6	61674961	62291225
KHDRBS2_chr6_61674961_62291225	0/0	t0017	1281	1	1	0	0	0	0	copy fasta	KHDRBS2	chr6	61674961	62291225
KHDRBS2_chr6_61674961_62291225	0/0	t0018	1280	1	0	0	1	0	0	copy fasta	KHDRBS2	chr6	61674961	62291225
KHDRBS3_chr8_135452456_135652610	0/0	t0001	939	185	50	26	86	3	20	copy fasta	KHDRBS3	chr8	135452456	135652610
KHDRBS3_chr8_135452456_135652610	0/1	t0002	940	111	23	27	44	5	11	copy fasta	KHDRBS3	chr8	135452456	135652610
KHDRBS3_chr8_135452456_135652610	1/0	t0003	938	30	10	10	2	4	3	copy fasta	KHDRBS3	chr8	135452456	135652610
KHDRBS3_chr8_135452456_135652610	0/0	t0004	938	5	5	0	0	0	0	copy fasta	KHDRBS3	chr8	135452456	135652610
KHDRBS3_chr8_135452456_135652610	0/0	t0005	938	3	0	0	3	0	0	copy fasta	KHDRBS3	chr8	135452456	135652610
KHDRBS3_chr8_135452456_135652610	0/0	t0006	940	3	0	3	0	0	0	copy fasta	KHDRBS3	chr8	135452456	135652610
KHDRBS3_chr8_135452456_135652610	0/0	t0007	939	2	1	1	0	0	0	copy fasta	KHDRBS3	chr8	135452456	135652610
KHDRBS3_chr8_135452456_135652610	0/0	t0008	940	1	0	1	0	0	0	copy fasta	KHDRBS3	chr8	135452456	135652610
KHDRBS3_chr8_135452456_135652610	0/0	t0009	939	1	0	0	1	0	0	copy fasta	KHDRBS3	chr8	135452456	135652610
KHDRBS3_chr8_135452456_135652610	0/0	t0010	940	1	1	0	0	0	0	copy fasta	KHDRBS3	chr8	135452456	135652610
KHK_chr2_27081772_27105762	0/1	t0001	1501	123	11	22	64	7	18	copy fasta	KHK	chr2	27081772	27105762
KHK_chr2_27081772_27105762	0/0	t0002	1501	98	16	28	38	7	9	copy fasta	KHK	chr2	27081772	27105762
KHK_chr2_27081772_27105762	0/0	t0003	1501	22	21	1	0	0	0	copy fasta	KHK	chr2	27081772	27105762
KHK_chr2_27081772_27105762	0/0	t0004	1514	16	11	5	0	0	0	copy fasta	KHK	chr2	27081772	27105762
KHK_chr2_27081772_27105762	0/0	t0005	1501	8	8	0	0	0	0	copy fasta	KHK	chr2	27081772	27105762
KHK_chr2_27081772_27105762	1/0	t0006	1501	7	6	0	0	0	0	copy fasta	KHK	chr2	27081772	27105762
KHK_chr2_27081772_27105762	0/0	t0007	1514	5	4	1	0	0	0	copy fasta	KHK	chr2	27081772	27105762
KHK_chr2_27081772_27105762	0/0	t0008	1501	5	4	1	0	0	0	copy fasta	KHK	chr2	27081772	27105762
KHK_chr2_27081772_27105762	0/0	t0009	1501	4	0	0	4	0	0	copy fasta	KHK	chr2	27081772	27105762
KHK_chr2_27081772_27105762	0/0	t0010	1501	4	0	2	0	2	0	copy fasta	KHK	chr2	27081772	27105762
KHK_chr2_27081772_27105762	0/0	t0011	1501	4	0	0	1	0	3	copy fasta	KHK	chr2	27081772	27105762
KHK_chr2_27081772_27105762	0/0	t0012	1501	3	0	0	0	0	3	copy fasta	KHK	chr2	27081772	27105762
KHK_chr2_27081772_27105762	0/0	t0013	1501	3	3	0	0	0	0	copy fasta	KHK	chr2	27081772	27105762
KHK_chr2_27081772_27105762	0/0	t0014	1501	3	0	0	3	0	0	copy fasta	KHK	chr2	27081772	27105762
KHK_chr2_27081772_27105762	0/0	t0015	1501	2	0	2	0	0	0	copy fasta	KHK	chr2	27081772	27105762
KHK_chr2_27081772_27105762	0/0	t0016	1501	2	2	0	0	0	0	copy fasta	KHK	chr2	27081772	27105762
KHK_chr2_27081772_27105762	0/0	t0017	1514	2	2	0	0	0	0	copy fasta	KHK	chr2	27081772	27105762
KHK_chr2_27081772_27105762	0/0	t0018	1501	2	0	2	0	0	0	copy fasta	KHK	chr2	27081772	27105762
KHK_chr2_27081772_27105762	0/0	t0019	1501	2	0	0	2	0	0	copy fasta	KHK	chr2	27081772	27105762
KHK_chr2_27081772_27105762	0/0	t0020	1514	1	0	1	0	0	0	copy fasta	KHK	chr2	27081772	27105762
KHK_chr2_27081772_27105762	0/0	t0021	1514	1	1	0	0	0	0	copy fasta	KHK	chr2	27081772	27105762
KHK_chr2_27081772_27105762	0/0	t0022	1501	1	0	1	0	0	0	copy fasta	KHK	chr2	27081772	27105762
KHK_chr2_27081772_27105762	0/0	t0023	1501	1	1	0	0	0	0	copy fasta	KHK	chr2	27081772	27105762
KHK_chr2_27081772_27105762	0/0	t0024	1501	1	0	1	0	0	0	copy fasta	KHK	chr2	27081772	27105762
KHK_chr2_27081772_27105762	0/0	t0025	1501	1	0	0	1	0	0	copy fasta	KHK	chr2	27081772	27105762
KHK_chr2_27081772_27105762	0/0	t0026	1501	1	0	0	1	0	0	copy fasta	KHK	chr2	27081772	27105762
KHK_chr2_27081772_27105762	0/0	t0027	1501	1	0	1	0	0	0	copy fasta	KHK	chr2	27081772	27105762
KHK_chr2_27081772_27105762	0/0	t0028	1501	1	0	0	0	0	1	copy fasta	KHK	chr2	27081772	27105762
KHNYN_chr14_24424954_24446843	0/0	t0001	4744	204	16	43	118	9	18	copy fasta	KHNYN	chr14	24424954	24446843
KHNYN_chr14_24424954_24446843	0/1	t0002	4744	89	4	19	48	4	13	copy fasta	KHNYN	chr14	24424954	24446843
KHNYN_chr14_24424954_24446843	0/0	t0003	4740	43	0	4	37	0	2	copy fasta	KHNYN	chr14	24424954	24446843
KHNYN_chr14_24424954_24446843	0/0	t0004	4740	28	24	2	0	2	0	copy fasta	KHNYN	chr14	24424954	24446843
KHNYN_chr14_24424954_24446843	0/0	t0005	4742	19	9	2	5	1	2	copy fasta	KHNYN	chr14	24424954	24446843
KHNYN_chr14_24424954_24446843	1/0	t0006	4742	14	8	0	3	0	2	copy fasta	KHNYN	chr14	24424954	24446843