JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KHNYN_chr14_24424954_24446843	0/0	t0007	4744	9	3	1	0	1	4	copy fasta	KHNYN	chr14	24424954	24446843
KHNYN_chr14_24424954_24446843	0/0	t0008	4740	7	7	0	0	0	0	copy fasta	KHNYN	chr14	24424954	24446843
KHNYN_chr14_24424954_24446843	0/0	t0009	4744	6	1	2	1	1	1	copy fasta	KHNYN	chr14	24424954	24446843
KHNYN_chr14_24424954_24446843	0/0	t0010	4745	6	5	0	0	0	1	copy fasta	KHNYN	chr14	24424954	24446843
KHNYN_chr14_24424954_24446843	0/0	t0011	4740	6	5	1	0	0	0	copy fasta	KHNYN	chr14	24424954	24446843
KHNYN_chr14_24424954_24446843	0/0	t0012	4744	3	0	0	3	0	0	copy fasta	KHNYN	chr14	24424954	24446843
KHNYN_chr14_24424954_24446843	0/0	t0013	4744	3	0	0	3	0	0	copy fasta	KHNYN	chr14	24424954	24446843
KHNYN_chr14_24424954_24446843	0/0	t0014	4744	2	0	0	0	0	2	copy fasta	KHNYN	chr14	24424954	24446843
KHNYN_chr14_24424954_24446843	0/0	t0015	4744	2	0	0	2	0	0	copy fasta	KHNYN	chr14	24424954	24446843
KHNYN_chr14_24424954_24446843	0/0	t0016	4744	2	0	2	0	0	0	copy fasta	KHNYN	chr14	24424954	24446843
KHNYN_chr14_24424954_24446843	0/0	t0017	4740	2	2	0	0	0	0	copy fasta	KHNYN	chr14	24424954	24446843
KHNYN_chr14_24424954_24446843	0/0	t0018	4745	1	1	0	0	0	0	copy fasta	KHNYN	chr14	24424954	24446843
KHNYN_chr14_24424954_24446843	0/0	t0019	4744	1	1	0	0	0	0	copy fasta	KHNYN	chr14	24424954	24446843
KHNYN_chr14_24424954_24446843	0/0	t0020	4740	1	1	0	0	0	0	copy fasta	KHNYN	chr14	24424954	24446843
KHNYN_chr14_24424954_24446843	0/0	t0021	4744	1	0	0	1	0	0	copy fasta	KHNYN	chr14	24424954	24446843
KHNYN_chr14_24424954_24446843	0/0	t0022	4744	1	0	1	0	0	0	copy fasta	KHNYN	chr14	24424954	24446843
KHNYN_chr14_24424954_24446843	0/0	t0023	4745	1	1	0	0	0	0	copy fasta	KHNYN	chr14	24424954	24446843
KHNYN_chr14_24424954_24446843	0/0	t0024	4745	1	1	0	0	0	0	copy fasta	KHNYN	chr14	24424954	24446843
KHNYN_chr14_24424954_24446843	0/0	t0025	4744	1	0	0	1	0	0	copy fasta	KHNYN	chr14	24424954	24446843
KHNYN_chr14_24424954_24446843	0/0	t0026	4744	1	0	1	0	0	0	copy fasta	KHNYN	chr14	24424954	24446843
KHNYN_chr14_24424954_24446843	0/0	t0027	4744	1	0	1	0	0	0	copy fasta	KHNYN	chr14	24424954	24446843
KHNYN_chr14_24424954_24446843	0/0	t0028	4742	1	0	0	1	0	0	copy fasta	KHNYN	chr14	24424954	24446843
KHNYN_chr14_24424954_24446843	0/0	t0029	4744	1	0	0	1	0	0	copy fasta	KHNYN	chr14	24424954	24446843
KHNYN_chr14_24424954_24446843	0/0	t0030	4744	1	0	0	0	0	1	copy fasta	KHNYN	chr14	24424954	24446843
KHNYN_chr14_24424954_24446843	0/0	t0031	4742	1	0	1	0	0	0	copy fasta	KHNYN	chr14	24424954	24446843
KHNYN_chr14_24424954_24446843	0/0	t0032	4744	1	0	0	1	0	0	copy fasta	KHNYN	chr14	24424954	24446843
KHNYN_chr14_24424954_24446843	0/0	t0033	4740	1	1	0	0	0	0	copy fasta	KHNYN	chr14	24424954	24446843
KHNYN_chr14_24424954_24446843	0/0	t0034	4740	1	0	0	1	0	0	copy fasta	KHNYN	chr14	24424954	24446843
KHSRP_chr19_6408102_6429811	0/1	t0001	2031	55	11	13	21	6	3	copy fasta	KHSRP	chr19	6408102	6429811
KHSRP_chr19_6408102_6429811	0/0	t0002	2034	51	2	11	26	3	9	copy fasta	KHSRP	chr19	6408102	6429811
KHSRP_chr19_6408102_6429811	0/0	t0003	2031	48	2	19	20	2	5	copy fasta	KHSRP	chr19	6408102	6429811
KHSRP_chr19_6408102_6429811	0/0	t0004	2033	23	6	0	14	0	3	copy fasta	KHSRP	chr19	6408102	6429811
KHSRP_chr19_6408102_6429811	0/0	t0005	2032	21	0	5	9	3	4	copy fasta	KHSRP	chr19	6408102	6429811
KHSRP_chr19_6408102_6429811	0/0	t0006	2032	14	7	3	3	1	0	copy fasta	KHSRP	chr19	6408102	6429811
KHSRP_chr19_6408102_6429811	0/0	t0007	2033	13	1	1	5	0	6	copy fasta	KHSRP	chr19	6408102	6429811
KHSRP_chr19_6408102_6429811	0/0	t0008	2033	12	1	3	6	0	2	copy fasta	KHSRP	chr19	6408102	6429811
KHSRP_chr19_6408102_6429811	0/0	t0009	2033	11	10	1	0	0	0	copy fasta	KHSRP	chr19	6408102	6429811
KHSRP_chr19_6408102_6429811	0/0	t0010	2030	9	2	1	5	1	0	copy fasta	KHSRP	chr19	6408102	6429811
KHSRP_chr19_6408102_6429811	0/0	t0011	2032	8	1	4	3	0	0	copy fasta	KHSRP	chr19	6408102	6429811
KHSRP_chr19_6408102_6429811	0/0	t0012	2034	7	0	2	4	0	1	copy fasta	KHSRP	chr19	6408102	6429811
KHSRP_chr19_6408102_6429811	0/0	t0013	2033	6	0	1	2	1	2	copy fasta	KHSRP	chr19	6408102	6429811
KHSRP_chr19_6408102_6429811	0/0	t0014	2034	5	0	4	1	0	0	copy fasta	KHSRP	chr19	6408102	6429811
KHSRP_chr19_6408102_6429811	0/0	t0015	2033	5	0	0	4	0	1	copy fasta	KHSRP	chr19	6408102	6429811
KHSRP_chr19_6408102_6429811	0/0	t0016	2033	5	0	0	4	0	1	copy fasta	KHSRP	chr19	6408102	6429811
KHSRP_chr19_6408102_6429811	0/0	t0017	2030	5	4	0	0	0	1	copy fasta	KHSRP	chr19	6408102	6429811
KHSRP_chr19_6408102_6429811	0/0	t0018	2030	5	4	1	0	0	0	copy fasta	KHSRP	chr19	6408102	6429811
KHSRP_chr19_6408102_6429811	0/0	t0019	2032	4	3	0	0	0	1	copy fasta	KHSRP	chr19	6408102	6429811
KHSRP_chr19_6408102_6429811	0/0	t0020	2032	4	0	1	1	0	2	copy fasta	KHSRP	chr19	6408102	6429811
KHSRP_chr19_6408102_6429811	0/0	t0021	2033	3	3	0	0	0	0	copy fasta	KHSRP	chr19	6408102	6429811
KHSRP_chr19_6408102_6429811	0/0	t0022	2031	3	3	0	0	0	0	copy fasta	KHSRP	chr19	6408102	6429811