JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KHSRP_chr19_6408102_6429811	0/0	t0023	2029	2	2	0	0	0	0	copy fasta	KHSRP	chr19	6408102	6429811
KHSRP_chr19_6408102_6429811	0/0	t0024	2033	2	0	0	2	0	0	copy fasta	KHSRP	chr19	6408102	6429811
KHSRP_chr19_6408102_6429811	0/0	t0025	2034	2	0	0	1	0	1	copy fasta	KHSRP	chr19	6408102	6429811
KHSRP_chr19_6408102_6429811	0/0	t0026	2031	2	1	1	0	0	0	copy fasta	KHSRP	chr19	6408102	6429811
KHSRP_chr19_6408102_6429811	0/0	t0027	2030	2	2	0	0	0	0	copy fasta	KHSRP	chr19	6408102	6429811
KHSRP_chr19_6408102_6429811	0/0	t0028	2034	2	0	0	1	0	1	copy fasta	KHSRP	chr19	6408102	6429811
KHSRP_chr19_6408102_6429811	0/0	t0029	2032	2	0	2	0	0	0	copy fasta	KHSRP	chr19	6408102	6429811
KHSRP_chr19_6408102_6429811	0/0	t0030	2034	2	2	0	0	0	0	copy fasta	KHSRP	chr19	6408102	6429811
KHSRP_chr19_6408102_6429811	0/0	t0031	2030	2	0	0	1	1	0	copy fasta	KHSRP	chr19	6408102	6429811
KHSRP_chr19_6408102_6429811	0/0	t0032	2032	2	1	0	1	0	0	copy fasta	KHSRP	chr19	6408102	6429811
KHSRP_chr19_6408102_6429811	0/0	t0033	2031	2	2	0	0	0	0	copy fasta	KHSRP	chr19	6408102	6429811
KHSRP_chr19_6408102_6429811	0/0	t0034	2031	2	2	0	0	0	0	copy fasta	KHSRP	chr19	6408102	6429811
KHSRP_chr19_6408102_6429811	0/0	t0035	2029	1	1	0	0	0	0	copy fasta	KHSRP	chr19	6408102	6429811
KHSRP_chr19_6408102_6429811	0/0	t0036	2032	1	1	0	0	0	0	copy fasta	KHSRP	chr19	6408102	6429811
KHSRP_chr19_6408102_6429811	0/0	t0037	2030	1	0	0	1	0	0	copy fasta	KHSRP	chr19	6408102	6429811
KHSRP_chr19_6408102_6429811	0/0	t0038	2035	1	0	1	0	0	0	copy fasta	KHSRP	chr19	6408102	6429811
KHSRP_chr19_6408102_6429811	0/0	t0039	2033	1	0	1	0	0	0	copy fasta	KHSRP	chr19	6408102	6429811
KHSRP_chr19_6408102_6429811	0/0	t0040	2034	1	0	0	1	0	0	copy fasta	KHSRP	chr19	6408102	6429811
KHSRP_chr19_6408102_6429811	0/0	t0041	2034	1	0	0	0	0	1	copy fasta	KHSRP	chr19	6408102	6429811
KHSRP_chr19_6408102_6429811	0/0	t0042	2034	1	0	0	1	0	0	copy fasta	KHSRP	chr19	6408102	6429811
KHSRP_chr19_6408102_6429811	0/0	t0043	2031	1	0	0	1	0	0	copy fasta	KHSRP	chr19	6408102	6429811
KHSRP_chr19_6408102_6429811	0/0	t0044	2033	1	1	0	0	0	0	copy fasta	KHSRP	chr19	6408102	6429811
KHSRP_chr19_6408102_6429811	0/0	t0045	2032	1	0	0	1	0	0	copy fasta	KHSRP	chr19	6408102	6429811
KHSRP_chr19_6408102_6429811	0/0	t0046	2031	1	1	0	0	0	0	copy fasta	KHSRP	chr19	6408102	6429811
KHSRP_chr19_6408102_6429811	0/0	t0047	2032	1	0	0	1	0	0	copy fasta	KHSRP	chr19	6408102	6429811
KHSRP_chr19_6408102_6429811	0/0	t0048	2034	1	0	0	1	0	0	copy fasta	KHSRP	chr19	6408102	6429811
KHSRP_chr19_6408102_6429811	0/0	t0049	2034	1	0	0	1	0	0	copy fasta	KHSRP	chr19	6408102	6429811
KHSRP_chr19_6408102_6429811	0/0	t0050	2031	1	0	0	1	0	0	copy fasta	KHSRP	chr19	6408102	6429811
KHSRP_chr19_6408102_6429811	0/0	t0051	2033	1	0	1	0	0	0	copy fasta	KHSRP	chr19	6408102	6429811
KHSRP_chr19_6408102_6429811	0/0	t0052	2030	1	0	0	1	0	0	copy fasta	KHSRP	chr19	6408102	6429811
KHSRP_chr19_6408102_6429811	0/0	t0053	2031	1	0	0	1	0	0	copy fasta	KHSRP	chr19	6408102	6429811
KHSRP_chr19_6408102_6429811	0/0	t0054	2032	1	1	0	0	0	0	copy fasta	KHSRP	chr19	6408102	6429811
KHSRP_chr19_6408102_6429811	0/0	t0055	2052	1	1	0	0	0	0	copy fasta	KHSRP	chr19	6408102	6429811
KHSRP_chr19_6408102_6429811	0/0	t0056	2034	1	0	0	1	0	0	copy fasta	KHSRP	chr19	6408102	6429811
KHSRP_chr19_6408102_6429811	0/0	t0057	2034	1	1	0	0	0	0	copy fasta	KHSRP	chr19	6408102	6429811
KHSRP_chr19_6408102_6429811	0/0	t0058	2035	1	1	0	0	0	0	copy fasta	KHSRP	chr19	6408102	6429811
KHSRP_chr19_6408102_6429811	0/0	t0059	2032	1	0	0	0	0	1	copy fasta	KHSRP	chr19	6408102	6429811
KHSRP_chr19_6408102_6429811	0/0	t0060	2031	1	0	0	1	0	0	copy fasta	KHSRP	chr19	6408102	6429811
KHSRP_chr19_6408102_6429811	0/0	t0061	2032	1	0	0	1	0	0	copy fasta	KHSRP	chr19	6408102	6429811
KHSRP_chr19_6408102_6429811	0/0	t0062	2034	1	0	0	0	0	1	copy fasta	KHSRP	chr19	6408102	6429811
KHSRP_chr19_6408102_6429811	0/0	t0063	2034	1	0	0	1	0	0	copy fasta	KHSRP	chr19	6408102	6429811
KHSRP_chr19_6408102_6429811	0/0	t0064	2033	1	0	0	1	0	0	copy fasta	KHSRP	chr19	6408102	6429811
KHSRP_chr19_6408102_6429811	0/0	t0065	2032	1	1	0	0	0	0	copy fasta	KHSRP	chr19	6408102	6429811
KHSRP_chr19_6408102_6429811	0/0	t0066	2033	1	1	0	0	0	0	copy fasta	KHSRP	chr19	6408102	6429811
KHSRP_chr19_6408102_6429811	0/0	t0067	2031	1	0	0	0	0	1	copy fasta	KHSRP	chr19	6408102	6429811
KHSRP_chr19_6408102_6429811	0/0	t0068	2032	1	1	0	0	0	0	copy fasta	KHSRP	chr19	6408102	6429811
KHSRP_chr19_6408102_6429811	0/0	t0069	2032	1	0	1	0	0	0	copy fasta	KHSRP	chr19	6408102	6429811
KHSRP_chr19_6408102_6429811	0/0	t0070	2032	1	1	0	0	0	0	copy fasta	KHSRP	chr19	6408102	6429811
KHSRP_chr19_6408102_6429811	0/0	t0071	2031	1	0	0	1	0	0	copy fasta	KHSRP	chr19	6408102	6429811
KHSRP_chr19_6408102_6429811	0/0	t0072	2030	1	1	0	0	0	0	copy fasta	KHSRP	chr19	6408102	6429811