JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KHSRP_chr19_6408102_6429811	0/0	t0073	2031	1	1	0	0	0	0	copy fasta	KHSRP	chr19	6408102	6429811
KHSRP_chr19_6408102_6429811	0/0	t0074	2033	1	0	0	1	0	0	copy fasta	KHSRP	chr19	6408102	6429811
KHSRP_chr19_6408102_6429811	0/0	t0075	2031	1	1	0	0	0	0	copy fasta	KHSRP	chr19	6408102	6429811
KHSRP_chr19_6408102_6429811	0/0	t0076	2030	1	1	0	0	0	0	copy fasta	KHSRP	chr19	6408102	6429811
KHSRP_chr19_6408102_6429811	1/0	t0077	2033	1	0	0	0	0	0	copy fasta	KHSRP	chr19	6408102	6429811
KHSRP_chr19_6408102_6429811	0/0	t0078	2031	1	0	1	0	0	0	copy fasta	KHSRP	chr19	6408102	6429811
KHSRP_chr19_6408102_6429811	0/0	t0079	2030	1	0	0	0	0	1	copy fasta	KHSRP	chr19	6408102	6429811
KIAA0040_chr1_175151986_175197776	0/0	t0001	4249	76	3	14	44	3	12	copy fasta	KIAA0040	chr1	175151986	175197776
KIAA0040_chr1_175151986_175197776	0/0	t0002	4248	63	1	2	50	2	8	copy fasta	KIAA0040	chr1	175151986	175197776
KIAA0040_chr1_175151986_175197776	0/0	t0003	4249	46	9	11	15	2	9	copy fasta	KIAA0040	chr1	175151986	175197776
KIAA0040_chr1_175151986_175197776	0/0	t0004	4249	44	5	9	27	1	2	copy fasta	KIAA0040	chr1	175151986	175197776
KIAA0040_chr1_175151986_175197776	0/0	t0005	4249	10	1	0	9	0	0	copy fasta	KIAA0040	chr1	175151986	175197776
KIAA0040_chr1_175151986_175197776	0/0	t0006	4249	7	6	1	0	0	0	copy fasta	KIAA0040	chr1	175151986	175197776
KIAA0040_chr1_175151986_175197776	0/0	t0007	4249	7	7	0	0	0	0	copy fasta	KIAA0040	chr1	175151986	175197776
KIAA0040_chr1_175151986_175197776	0/0	t0008	4249	7	0	4	1	2	0	copy fasta	KIAA0040	chr1	175151986	175197776
KIAA0040_chr1_175151986_175197776	0/0	t0009	4249	5	2	0	3	0	0	copy fasta	KIAA0040	chr1	175151986	175197776
KIAA0040_chr1_175151986_175197776	0/0	t0010	4249	5	0	0	5	0	0	copy fasta	KIAA0040	chr1	175151986	175197776
KIAA0040_chr1_175151986_175197776	0/0	t0011	4249	4	0	4	0	0	0	copy fasta	KIAA0040	chr1	175151986	175197776
KIAA0040_chr1_175151986_175197776	0/0	t0012	4249	4	2	2	0	0	0	copy fasta	KIAA0040	chr1	175151986	175197776
KIAA0040_chr1_175151986_175197776	0/0	t0013	4249	4	0	4	0	0	0	copy fasta	KIAA0040	chr1	175151986	175197776
KIAA0040_chr1_175151986_175197776	0/0	t0014	4249	3	0	0	3	0	0	copy fasta	KIAA0040	chr1	175151986	175197776
KIAA0040_chr1_175151986_175197776	0/0	t0015	4248	3	0	0	3	0	0	copy fasta	KIAA0040	chr1	175151986	175197776
KIAA0040_chr1_175151986_175197776	0/0	t0016	4248	3	0	0	3	0	0	copy fasta	KIAA0040	chr1	175151986	175197776
KIAA0040_chr1_175151986_175197776	0/0	t0017	4249	3	3	0	0	0	0	copy fasta	KIAA0040	chr1	175151986	175197776
KIAA0040_chr1_175151986_175197776	0/0	t0018	4249	3	0	0	2	0	1	copy fasta	KIAA0040	chr1	175151986	175197776
KIAA0040_chr1_175151986_175197776	1/0	t0019	4249	3	0	2	0	0	0	copy fasta	KIAA0040	chr1	175151986	175197776
KIAA0040_chr1_175151986_175197776	0/0	t0020	4249	3	2	1	0	0	0	copy fasta	KIAA0040	chr1	175151986	175197776
KIAA0040_chr1_175151986_175197776	0/0	t0021	4249	3	3	0	0	0	0	copy fasta	KIAA0040	chr1	175151986	175197776
KIAA0040_chr1_175151986_175197776	0/0	t0022	4249	3	2	0	1	0	0	copy fasta	KIAA0040	chr1	175151986	175197776
KIAA0040_chr1_175151986_175197776	0/0	t0023	4249	3	3	0	0	0	0	copy fasta	KIAA0040	chr1	175151986	175197776
KIAA0040_chr1_175151986_175197776	0/0	t0024	4249	2	0	0	2	0	0	copy fasta	KIAA0040	chr1	175151986	175197776
KIAA0040_chr1_175151986_175197776	0/0	t0025	4248	2	0	0	2	0	0	copy fasta	KIAA0040	chr1	175151986	175197776
KIAA0040_chr1_175151986_175197776	0/0	t0026	4249	2	2	0	0	0	0	copy fasta	KIAA0040	chr1	175151986	175197776
KIAA0040_chr1_175151986_175197776	0/0	t0027	4249	2	2	0	0	0	0	copy fasta	KIAA0040	chr1	175151986	175197776
KIAA0040_chr1_175151986_175197776	0/0	t0028	4249	2	0	0	1	0	1	copy fasta	KIAA0040	chr1	175151986	175197776
KIAA0040_chr1_175151986_175197776	0/0	t0029	4249	2	2	0	0	0	0	copy fasta	KIAA0040	chr1	175151986	175197776
KIAA0040_chr1_175151986_175197776	0/0	t0030	4249	2	0	1	0	0	1	copy fasta	KIAA0040	chr1	175151986	175197776
KIAA0040_chr1_175151986_175197776	0/0	t0031	4249	2	1	1	0	0	0	copy fasta	KIAA0040	chr1	175151986	175197776
KIAA0040_chr1_175151986_175197776	0/0	t0032	4249	2	2	0	0	0	0	copy fasta	KIAA0040	chr1	175151986	175197776
KIAA0040_chr1_175151986_175197776	0/0	t0033	4249	2	1	1	0	0	0	copy fasta	KIAA0040	chr1	175151986	175197776
KIAA0040_chr1_175151986_175197776	0/0	t0034	4249	2	2	0	0	0	0	copy fasta	KIAA0040	chr1	175151986	175197776
KIAA0040_chr1_175151986_175197776	0/0	t0035	4249	2	2	0	0	0	0	copy fasta	KIAA0040	chr1	175151986	175197776
KIAA0040_chr1_175151986_175197776	0/0	t0036	4248	2	2	0	0	0	0	copy fasta	KIAA0040	chr1	175151986	175197776
KIAA0040_chr1_175151986_175197776	0/0	t0037	4249	2	0	2	0	0	0	copy fasta	KIAA0040	chr1	175151986	175197776
KIAA0040_chr1_175151986_175197776	0/0	t0038	4249	2	2	0	0	0	0	copy fasta	KIAA0040	chr1	175151986	175197776
KIAA0040_chr1_175151986_175197776	0/0	t0039	4248	1	0	0	1	0	0	copy fasta	KIAA0040	chr1	175151986	175197776
KIAA0040_chr1_175151986_175197776	0/0	t0040	4248	1	0	0	1	0	0	copy fasta	KIAA0040	chr1	175151986	175197776
KIAA0040_chr1_175151986_175197776	0/0	t0041	4248	1	0	0	0	1	0	copy fasta	KIAA0040	chr1	175151986	175197776
KIAA0040_chr1_175151986_175197776	0/0	t0042	4248	1	0	0	0	0	1	copy fasta	KIAA0040	chr1	175151986	175197776
KIAA0040_chr1_175151986_175197776	0/0	t0043	4248	1	0	0	1	0	0	copy fasta	KIAA0040	chr1	175151986	175197776