JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KIAA0040_chr1_175151986_175197776	0/0	t0044	4248	1	0	1	0	0	0	copy fasta	KIAA0040	chr1	175151986	175197776
KIAA0040_chr1_175151986_175197776	0/0	t0045	4249	1	1	0	0	0	0	copy fasta	KIAA0040	chr1	175151986	175197776
KIAA0040_chr1_175151986_175197776	0/1	t0046	4249	1	0	0	0	0	0	copy fasta	KIAA0040	chr1	175151986	175197776
KIAA0040_chr1_175151986_175197776	0/0	t0047	4249	1	1	0	0	0	0	copy fasta	KIAA0040	chr1	175151986	175197776
KIAA0040_chr1_175151986_175197776	0/0	t0048	4249	1	1	0	0	0	0	copy fasta	KIAA0040	chr1	175151986	175197776
KIAA0040_chr1_175151986_175197776	0/0	t0049	4249	1	1	0	0	0	0	copy fasta	KIAA0040	chr1	175151986	175197776
KIAA0040_chr1_175151986_175197776	0/0	t0050	4249	1	1	0	0	0	0	copy fasta	KIAA0040	chr1	175151986	175197776
KIAA0040_chr1_175151986_175197776	0/0	t0051	4249	1	1	0	0	0	0	copy fasta	KIAA0040	chr1	175151986	175197776
KIAA0040_chr1_175151986_175197776	0/0	t0052	4249	1	1	0	0	0	0	copy fasta	KIAA0040	chr1	175151986	175197776
KIAA0040_chr1_175151986_175197776	0/0	t0053	4249	1	0	0	1	0	0	copy fasta	KIAA0040	chr1	175151986	175197776
KIAA0040_chr1_175151986_175197776	0/0	t0054	4249	1	0	0	1	0	0	copy fasta	KIAA0040	chr1	175151986	175197776
KIAA0040_chr1_175151986_175197776	0/0	t0055	4249	1	0	0	1	0	0	copy fasta	KIAA0040	chr1	175151986	175197776
KIAA0040_chr1_175151986_175197776	0/0	t0056	4249	1	0	0	0	0	1	copy fasta	KIAA0040	chr1	175151986	175197776
KIAA0040_chr1_175151986_175197776	0/0	t0057	4249	1	0	0	1	0	0	copy fasta	KIAA0040	chr1	175151986	175197776
KIAA0040_chr1_175151986_175197776	0/0	t0058	4249	1	1	0	0	0	0	copy fasta	KIAA0040	chr1	175151986	175197776
KIAA0040_chr1_175151986_175197776	0/0	t0059	4249	1	1	0	0	0	0	copy fasta	KIAA0040	chr1	175151986	175197776
KIAA0040_chr1_175151986_175197776	0/0	t0060	4249	1	1	0	0	0	0	copy fasta	KIAA0040	chr1	175151986	175197776
KIAA0040_chr1_175151986_175197776	0/0	t0061	4249	1	0	0	0	1	0	copy fasta	KIAA0040	chr1	175151986	175197776
KIAA0040_chr1_175151986_175197776	0/0	t0062	4249	1	0	0	0	0	1	copy fasta	KIAA0040	chr1	175151986	175197776
KIAA0040_chr1_175151986_175197776	0/0	t0063	4249	1	1	0	0	0	0	copy fasta	KIAA0040	chr1	175151986	175197776
KIAA0040_chr1_175151986_175197776	0/0	t0064	4249	1	0	0	0	0	1	copy fasta	KIAA0040	chr1	175151986	175197776
KIAA0040_chr1_175151986_175197776	0/0	t0065	4249	1	1	0	0	0	0	copy fasta	KIAA0040	chr1	175151986	175197776
KIAA0040_chr1_175151986_175197776	0/0	t0066	4249	1	1	0	0	0	0	copy fasta	KIAA0040	chr1	175151986	175197776
KIAA0040_chr1_175151986_175197776	0/0	t0067	4249	1	1	0	0	0	0	copy fasta	KIAA0040	chr1	175151986	175197776
KIAA0040_chr1_175151986_175197776	0/0	t0068	4248	1	1	0	0	0	0	copy fasta	KIAA0040	chr1	175151986	175197776
KIAA0040_chr1_175151986_175197776	0/0	t0069	4248	1	1	0	0	0	0	copy fasta	KIAA0040	chr1	175151986	175197776
KIAA0040_chr1_175151986_175197776	0/0	t0070	4249	1	1	0	0	0	0	copy fasta	KIAA0040	chr1	175151986	175197776
KIAA0040_chr1_175151986_175197776	0/0	t0071	4249	1	1	0	0	0	0	copy fasta	KIAA0040	chr1	175151986	175197776
KIAA0040_chr1_175151986_175197776	0/0	t0072	4249	1	1	0	0	0	0	copy fasta	KIAA0040	chr1	175151986	175197776
KIAA0040_chr1_175151986_175197776	0/0	t0073	4249	1	1	0	0	0	0	copy fasta	KIAA0040	chr1	175151986	175197776
KIAA0040_chr1_175151986_175197776	0/0	t0074	4249	1	1	0	0	0	0	copy fasta	KIAA0040	chr1	175151986	175197776
KIAA0040_chr1_175151986_175197776	0/0	t0075	4249	1	1	0	0	0	0	copy fasta	KIAA0040	chr1	175151986	175197776
KIAA0040_chr1_175151986_175197776	0/0	t0076	4249	1	1	0	0	0	0	copy fasta	KIAA0040	chr1	175151986	175197776
KIAA0040_chr1_175151986_175197776	0/0	t0077	4249	1	1	0	0	0	0	copy fasta	KIAA0040	chr1	175151986	175197776
KIAA0040_chr1_175151986_175197776	0/0	t0078	4248	1	1	0	0	0	0	copy fasta	KIAA0040	chr1	175151986	175197776
KIAA0040_chr1_175151986_175197776	0/0	t0079	4248	1	1	0	0	0	0	copy fasta	KIAA0040	chr1	175151986	175197776
KIAA0040_chr1_175151986_175197776	0/0	t0080	4248	1	1	0	0	0	0	copy fasta	KIAA0040	chr1	175151986	175197776
KIAA0040_chr1_175151986_175197776	0/0	t0081	4249	1	1	0	0	0	0	copy fasta	KIAA0040	chr1	175151986	175197776
KIAA0040_chr1_175151986_175197776	0/0	t0082	4249	1	1	0	0	0	0	copy fasta	KIAA0040	chr1	175151986	175197776
KIAA0040_chr1_175151986_175197776	0/0	t0083	4249	1	0	0	1	0	0	copy fasta	KIAA0040	chr1	175151986	175197776
KIAA0040_chr1_175151986_175197776	0/0	t0084	4249	1	0	0	0	0	1	copy fasta	KIAA0040	chr1	175151986	175197776
KIAA0040_chr1_175151986_175197776	0/0	t0085	4249	1	0	0	0	0	1	copy fasta	KIAA0040	chr1	175151986	175197776
KIAA0040_chr1_175151986_175197776	0/0	t0086	4249	1	0	1	0	0	0	copy fasta	KIAA0040	chr1	175151986	175197776
KIAA0040_chr1_175151986_175197776	0/0	t0087	4249	1	0	0	1	0	0	copy fasta	KIAA0040	chr1	175151986	175197776
KIAA0040_chr1_175151986_175197776	0/0	t0088	4249	1	0	0	0	0	1	copy fasta	KIAA0040	chr1	175151986	175197776
KIAA0040_chr1_175151986_175197776	0/0	t0089	4249	1	0	0	0	0	1	copy fasta	KIAA0040	chr1	175151986	175197776
KIAA0040_chr1_175151986_175197776	0/0	t0090	4249	1	0	1	0	0	0	copy fasta	KIAA0040	chr1	175151986	175197776
KIAA0232_chr4_6777727_6889164	0/0	t0001	3667	92	15	15	54	1	7	copy fasta	KIAA0232	chr4	6777727	6889164
KIAA0232_chr4_6777727_6889164	0/0	t0002	3667	85	0	10	70	2	3	copy fasta	KIAA0232	chr4	6777727	6889164
KIAA0232_chr4_6777727_6889164	0/0	t0003	3667	60	23	14	9	4	10	copy fasta	KIAA0232	chr4	6777727	6889164