Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
AOC3_chr17_42846199_42863124	1/1	t0001	1720	222	44	64	70	8	34	copy fasta	AOC3	chr17	42846199	42863124
AOC3_chr17_42846199_42863124	0/0	t0002	1720	15	15	0	0	0	0	copy fasta	AOC3	chr17	42846199	42863124
AOC3_chr17_42846199_42863124	0/0	t0003	1720	12	11	1	0	0	0	copy fasta	AOC3	chr17	42846199	42863124
AOC3_chr17_42846199_42863124	0/0	t0004	1720	8	8	0	0	0	0	copy fasta	AOC3	chr17	42846199	42863124
AOC3_chr17_42846199_42863124	0/0	t0005	1719	5	5	0	0	0	0	copy fasta	AOC3	chr17	42846199	42863124
AOC3_chr17_42846199_42863124	0/0	t0006	1720	4	3	1	0	0	0	copy fasta	AOC3	chr17	42846199	42863124
AOC3_chr17_42846199_42863124	0/0	t0007	1720	3	3	0	0	0	0	copy fasta	AOC3	chr17	42846199	42863124
AOC3_chr17_42846199_42863124	0/0	t0008	1720	2	0	0	2	0	0	copy fasta	AOC3	chr17	42846199	42863124
AOC3_chr17_42846199_42863124	0/0	t0009	1720	2	0	2	0	0	0	copy fasta	AOC3	chr17	42846199	42863124
AOC3_chr17_42846199_42863124	0/0	t0010	1720	2	0	0	2	0	0	copy fasta	AOC3	chr17	42846199	42863124
AOC3_chr17_42846199_42863124	0/0	t0011	1720	2	2	0	0	0	0	copy fasta	AOC3	chr17	42846199	42863124
AOC3_chr17_42846199_42863124	0/0	t0012	1720	1	0	0	1	0	0	copy fasta	AOC3	chr17	42846199	42863124
AOC3_chr17_42846199_42863124	0/0	t0013	1720	1	0	0	1	0	0	copy fasta	AOC3	chr17	42846199	42863124
AOC3_chr17_42846199_42863124	0/0	t0014	1720	1	0	0	0	0	1	copy fasta	AOC3	chr17	42846199	42863124
AOC3_chr17_42846199_42863124	0/0	t0015	1720	1	1	0	0	0	0	copy fasta	AOC3	chr17	42846199	42863124
AOC3_chr17_42846199_42863124	0/0	t0016	1720	1	1	0	0	0	0	copy fasta	AOC3	chr17	42846199	42863124
AOC3_chr17_42846199_42863124	0/0	t0017	1720	1	1	0	0	0	0	copy fasta	AOC3	chr17	42846199	42863124
AOC3_chr17_42846199_42863124	0/0	t0018	1720	1	0	0	0	0	1	copy fasta	AOC3	chr17	42846199	42863124
AOPEP_chr9_94721699_95092159	1/0	t0001	671	89	23	16	37	0	12	copy fasta	AOPEP	chr9	94721699	95092159
AOPEP_chr9_94721699_95092159	0/1	t0002	671	81	33	6	27	2	12	copy fasta	AOPEP	chr9	94721699	95092159
AOPEP_chr9_94721699_95092159	0/0	t0003	671	9	9	0	0	0	0	copy fasta	AOPEP	chr9	94721699	95092159
AOPEP_chr9_94721699_95092159	0/0	t0004	671	2	2	0	0	0	0	copy fasta	AOPEP	chr9	94721699	95092159
AOPEP_chr9_94721699_95092159	0/0	t0005	671	1	1	0	0	0	0	copy fasta	AOPEP	chr9	94721699	95092159
AOX1_chr2_200581014_200676495	0/0	t0001	912	180	54	25	74	4	23	copy fasta	AOX1	chr2	200581014	200676495
AOX1_chr2_200581014_200676495	0/0	t0002	910	141	13	33	75	6	14	copy fasta	AOX1	chr2	200581014	200676495
AOX1_chr2_200581014_200676495	0/1	t0003	912	31	0	12	11	2	5	copy fasta	AOX1	chr2	200581014	200676495
AOX1_chr2_200581014_200676495	0/0	t0004	910	7	7	0	0	0	0	copy fasta	AOX1	chr2	200581014	200676495
AOX1_chr2_200581014_200676495	1/0	t0005	912	4	3	0	0	0	0	copy fasta	AOX1	chr2	200581014	200676495
AOX1_chr2_200581014_200676495	0/0	t0006	912	2	2	0	0	0	0	copy fasta	AOX1	chr2	200581014	200676495
AOX1_chr2_200581014_200676495	0/0	t0007	912	2	2	0	0	0	0	copy fasta	AOX1	chr2	200581014	200676495
AOX1_chr2_200581014_200676495	0/0	t0008	910	1	0	0	1	0	0	copy fasta	AOX1	chr2	200581014	200676495
AOX1_chr2_200581014_200676495	0/0	t0009	912	1	1	0	0	0	0	copy fasta	AOX1	chr2	200581014	200676495
AOX1_chr2_200581014_200676495	0/0	t0010	910	1	0	0	1	0	0	copy fasta	AOX1	chr2	200581014	200676495
AP1AR_chr4_112226787_112278110	0/0	t0001	5009	123	40	14	60	2	7	copy fasta	AP1AR	chr4	112226787	112278110
AP1AR_chr4_112226787_112278110	1/0	t0002	5007	88	8	25	40	3	11	copy fasta	AP1AR	chr4	112226787	112278110
AP1AR_chr4_112226787_112278110	0/0	t0003	5007	47	0	2	44	0	1	copy fasta	AP1AR	chr4	112226787	112278110
AP1AR_chr4_112226787_112278110	0/0	t0004	5009	36	5	6	20	3	2	copy fasta	AP1AR	chr4	112226787	112278110
AP1AR_chr4_112226787_112278110	0/0	t0005	5013	25	8	7	5	1	4	copy fasta	AP1AR	chr4	112226787	112278110
AP1AR_chr4_112226787_112278110	0/1	t0006	5015	20	6	5	4	0	4	copy fasta	AP1AR	chr4	112226787	112278110
AP1AR_chr4_112226787_112278110	0/0	t0007	5007	8	7	1	0	0	0	copy fasta	AP1AR	chr4	112226787	112278110
AP1AR_chr4_112226787_112278110	0/0	t0008	5007	4	1	0	3	0	0	copy fasta	AP1AR	chr4	112226787	112278110
AP1AR_chr4_112226787_112278110	0/0	t0009	5009	3	3	0	0	0	0	copy fasta	AP1AR	chr4	112226787	112278110
AP1AR_chr4_112226787_112278110	0/0	t0010	5007	3	0	3	0	0	0	copy fasta	AP1AR	chr4	112226787	112278110
AP1AR_chr4_112226787_112278110	0/0	t0011	5007	3	2	0	1	0	0	copy fasta	AP1AR	chr4	112226787	112278110
AP1AR_chr4_112226787_112278110	0/0	t0012	5007	3	0	2	0	1	0	copy fasta	AP1AR	chr4	112226787	112278110
AP1AR_chr4_112226787_112278110	0/0	t0013	5019	2	0	0	2	0	0	copy fasta	AP1AR	chr4	112226787	112278110
AP1AR_chr4_112226787_112278110	0/0	t0014	5017	2	0	1	0	0	1	copy fasta	AP1AR	chr4	112226787	112278110
AP1AR_chr4_112226787_112278110	0/0	t0015	5009	2	1	1	0	0	0	copy fasta	AP1AR	chr4	112226787	112278110
AP1AR_chr4_112226787_112278110	0/0	t0016	5009	2	1	0	0	1	0	copy fasta	AP1AR	chr4	112226787	112278110
AP1AR_chr4_112226787_112278110	0/0	t0017	5007	2	2	0	0	0	0	copy fasta	AP1AR	chr4	112226787	112278110