JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KIAA0232_chr4_6777727_6889164	0/0	t0004	3665	24	3	1	10	5	5	copy fasta	KIAA0232	chr4	6777727	6889164
KIAA0232_chr4_6777727_6889164	0/0	t0005	3665	22	15	5	1	0	1	copy fasta	KIAA0232	chr4	6777727	6889164
KIAA0232_chr4_6777727_6889164	0/0	t0006	3667	11	6	1	0	0	4	copy fasta	KIAA0232	chr4	6777727	6889164
KIAA0232_chr4_6777727_6889164	0/0	t0007	3665	6	4	2	0	0	0	copy fasta	KIAA0232	chr4	6777727	6889164
KIAA0232_chr4_6777727_6889164	0/0	t0008	3663	5	0	2	0	0	3	copy fasta	KIAA0232	chr4	6777727	6889164
KIAA0232_chr4_6777727_6889164	0/0	t0009	3662	5	5	0	0	0	0	copy fasta	KIAA0232	chr4	6777727	6889164
KIAA0232_chr4_6777727_6889164	0/0	t0010	3667	3	0	0	3	0	0	copy fasta	KIAA0232	chr4	6777727	6889164
KIAA0232_chr4_6777727_6889164	0/0	t0011	3667	3	3	0	0	0	0	copy fasta	KIAA0232	chr4	6777727	6889164
KIAA0232_chr4_6777727_6889164	1/1	t0012	3667	3	0	0	0	1	0	copy fasta	KIAA0232	chr4	6777727	6889164
KIAA0232_chr4_6777727_6889164	0/0	t0013	3665	3	0	0	3	0	0	copy fasta	KIAA0232	chr4	6777727	6889164
KIAA0232_chr4_6777727_6889164	0/0	t0014	3665	3	0	0	0	0	3	copy fasta	KIAA0232	chr4	6777727	6889164
KIAA0232_chr4_6777727_6889164	0/0	t0015	3667	3	3	0	0	0	0	copy fasta	KIAA0232	chr4	6777727	6889164
KIAA0232_chr4_6777727_6889164	0/0	t0016	3667	3	0	0	0	1	2	copy fasta	KIAA0232	chr4	6777727	6889164
KIAA0232_chr4_6777727_6889164	0/0	t0017	3669	3	3	0	0	0	0	copy fasta	KIAA0232	chr4	6777727	6889164
KIAA0232_chr4_6777727_6889164	0/0	t0018	3663	2	1	1	0	0	0	copy fasta	KIAA0232	chr4	6777727	6889164
KIAA0232_chr4_6777727_6889164	0/0	t0019	3667	1	0	0	1	0	0	copy fasta	KIAA0232	chr4	6777727	6889164
KIAA0232_chr4_6777727_6889164	0/0	t0020	3667	1	0	0	1	0	0	copy fasta	KIAA0232	chr4	6777727	6889164
KIAA0232_chr4_6777727_6889164	0/0	t0021	3667	1	0	1	0	0	0	copy fasta	KIAA0232	chr4	6777727	6889164
KIAA0232_chr4_6777727_6889164	0/0	t0022	3663	1	0	0	1	0	0	copy fasta	KIAA0232	chr4	6777727	6889164
KIAA0232_chr4_6777727_6889164	0/0	t0023	3667	1	1	0	0	0	0	copy fasta	KIAA0232	chr4	6777727	6889164
KIAA0232_chr4_6777727_6889164	0/0	t0024	3667	1	0	0	1	0	0	copy fasta	KIAA0232	chr4	6777727	6889164
KIAA0232_chr4_6777727_6889164	0/0	t0025	3667	1	0	0	0	0	1	copy fasta	KIAA0232	chr4	6777727	6889164
KIAA0232_chr4_6777727_6889164	0/0	t0026	3667	1	0	0	0	0	1	copy fasta	KIAA0232	chr4	6777727	6889164
KIAA0232_chr4_6777727_6889164	0/0	t0027	3667	1	1	0	0	0	0	copy fasta	KIAA0232	chr4	6777727	6889164
KIAA0232_chr4_6777727_6889164	0/0	t0028	3667	1	0	0	1	0	0	copy fasta	KIAA0232	chr4	6777727	6889164
KIAA0232_chr4_6777727_6889164	0/0	t0029	3667	1	0	0	1	0	0	copy fasta	KIAA0232	chr4	6777727	6889164
KIAA0232_chr4_6777727_6889164	0/0	t0030	3665	1	1	0	0	0	0	copy fasta	KIAA0232	chr4	6777727	6889164
KIAA0232_chr4_6777727_6889164	0/0	t0031	3667	1	1	0	0	0	0	copy fasta	KIAA0232	chr4	6777727	6889164
KIAA0232_chr4_6777727_6889164	0/0	t0032	3667	1	0	0	0	0	1	copy fasta	KIAA0232	chr4	6777727	6889164
KIAA0232_chr4_6777727_6889164	0/0	t0033	3667	1	1	0	0	0	0	copy fasta	KIAA0232	chr4	6777727	6889164
KIAA0232_chr4_6777727_6889164	0/0	t0034	3667	1	1	0	0	0	0	copy fasta	KIAA0232	chr4	6777727	6889164
KIAA0232_chr4_6777727_6889164	0/0	t0035	3667	1	1	0	0	0	0	copy fasta	KIAA0232	chr4	6777727	6889164
KIAA0232_chr4_6777727_6889164	0/0	t0036	3667	1	1	0	0	0	0	copy fasta	KIAA0232	chr4	6777727	6889164
KIAA0232_chr4_6777727_6889164	0/0	t0037	3665	1	0	0	0	0	1	copy fasta	KIAA0232	chr4	6777727	6889164
KIAA0232_chr4_6777727_6889164	0/0	t0038	3667	1	1	0	0	0	0	copy fasta	KIAA0232	chr4	6777727	6889164
KIAA0232_chr4_6777727_6889164	0/0	t0039	3667	1	0	0	1	0	0	copy fasta	KIAA0232	chr4	6777727	6889164
KIAA0232_chr4_6777727_6889164	0/0	t0040	3667	1	0	0	1	0	0	copy fasta	KIAA0232	chr4	6777727	6889164
KIAA0232_chr4_6777727_6889164	0/0	t0041	3667	1	0	0	1	0	0	copy fasta	KIAA0232	chr4	6777727	6889164
KIAA0232_chr4_6777727_6889164	0/0	t0042	3667	1	0	0	1	0	0	copy fasta	KIAA0232	chr4	6777727	6889164
KIAA0232_chr4_6777727_6889164	0/0	t0043	3667	1	0	0	1	0	0	copy fasta	KIAA0232	chr4	6777727	6889164
KIAA0232_chr4_6777727_6889164	0/0	t0044	3667	1	0	0	1	0	0	copy fasta	KIAA0232	chr4	6777727	6889164
KIAA0319L_chr1_35428492_35562403	0/0	t0001	1624	123	37	11	65	3	7	copy fasta	KIAA0319L	chr1	35428492	35562403
KIAA0319L_chr1_35428492_35562403	1/1	t0002	1628	86	9	23	37	4	11	copy fasta	KIAA0319L	chr1	35428492	35562403
KIAA0319L_chr1_35428492_35562403	0/0	t0003	1624	50	13	8	27	0	2	copy fasta	KIAA0319L	chr1	35428492	35562403
KIAA0319L_chr1_35428492_35562403	0/0	t0004	1628	15	8	4	0	1	2	copy fasta	KIAA0319L	chr1	35428492	35562403
KIAA0319L_chr1_35428492_35562403	0/0	t0005	1623	8	7	1	0	0	0	copy fasta	KIAA0319L	chr1	35428492	35562403
KIAA0319L_chr1_35428492_35562403	0/0	t0006	1625	7	1	1	5	0	0	copy fasta	KIAA0319L	chr1	35428492	35562403
KIAA0319L_chr1_35428492_35562403	0/0	t0007	1625	6	1	1	4	0	0	copy fasta	KIAA0319L	chr1	35428492	35562403
KIAA0319L_chr1_35428492_35562403	0/0	t0008	1624	6	6	0	0	0	0	copy fasta	KIAA0319L	chr1	35428492	35562403
KIAA0319L_chr1_35428492_35562403	0/0	t0009	1624	3	1	2	0	0	0	copy fasta	KIAA0319L	chr1	35428492	35562403