JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KIAA0408_chr6_127433406_127464389	0/0	t0035	6039	1	0	0	1	0	0	copy fasta	KIAA0408	chr6	127433406	127464389
KIAA0408_chr6_127433406_127464389	0/0	t0036	6039	1	0	0	0	0	1	copy fasta	KIAA0408	chr6	127433406	127464389
KIAA0408_chr6_127433406_127464389	0/0	t0037	6039	1	0	1	0	0	0	copy fasta	KIAA0408	chr6	127433406	127464389
KIAA0408_chr6_127433406_127464389	0/0	t0038	6039	1	0	0	1	0	0	copy fasta	KIAA0408	chr6	127433406	127464389
KIAA0408_chr6_127433406_127464389	0/0	t0039	6039	1	0	0	1	0	0	copy fasta	KIAA0408	chr6	127433406	127464389
KIAA0408_chr6_127433406_127464389	0/0	t0040	6039	1	0	0	1	0	0	copy fasta	KIAA0408	chr6	127433406	127464389
KIAA0408_chr6_127433406_127464389	0/0	t0041	6039	1	0	0	1	0	0	copy fasta	KIAA0408	chr6	127433406	127464389
KIAA0513_chr16_85022795_85099218	0/0	t0001	6130	52	10	5	36	0	1	copy fasta	KIAA0513	chr16	85022795	85099218
KIAA0513_chr16_85022795_85099218	0/0	t0002	6130	49	4	7	30	3	5	copy fasta	KIAA0513	chr16	85022795	85099218
KIAA0513_chr16_85022795_85099218	0/0	t0003	6126	24	2	9	1	3	9	copy fasta	KIAA0513	chr16	85022795	85099218
KIAA0513_chr16_85022795_85099218	0/0	t0004	6128	23	0	5	14	1	3	copy fasta	KIAA0513	chr16	85022795	85099218
KIAA0513_chr16_85022795_85099218	0/0	t0005	6126	18	0	5	9	1	3	copy fasta	KIAA0513	chr16	85022795	85099218
KIAA0513_chr16_85022795_85099218	0/0	t0006	6128	14	5	2	6	0	1	copy fasta	KIAA0513	chr16	85022795	85099218
KIAA0513_chr16_85022795_85099218	0/0	t0007	6128	12	0	7	4	1	0	copy fasta	KIAA0513	chr16	85022795	85099218
KIAA0513_chr16_85022795_85099218	0/0	t0008	6130	11	1	0	8	0	2	copy fasta	KIAA0513	chr16	85022795	85099218
KIAA0513_chr16_85022795_85099218	0/0	t0009	6128	10	0	0	7	0	3	copy fasta	KIAA0513	chr16	85022795	85099218
KIAA0513_chr16_85022795_85099218	0/0	t0010	6131	9	0	0	6	0	3	copy fasta	KIAA0513	chr16	85022795	85099218
KIAA0513_chr16_85022795_85099218	0/0	t0011	6130	7	0	3	2	1	1	copy fasta	KIAA0513	chr16	85022795	85099218
KIAA0513_chr16_85022795_85099218	0/0	t0012	6127	7	4	1	0	1	1	copy fasta	KIAA0513	chr16	85022795	85099218
KIAA0513_chr16_85022795_85099218	0/0	t0013	6128	4	3	1	0	0	0	copy fasta	KIAA0513	chr16	85022795	85099218
KIAA0513_chr16_85022795_85099218	0/0	t0014	6130	4	0	0	4	0	0	copy fasta	KIAA0513	chr16	85022795	85099218
KIAA0513_chr16_85022795_85099218	0/0	t0015	6128	4	3	1	0	0	0	copy fasta	KIAA0513	chr16	85022795	85099218
KIAA0513_chr16_85022795_85099218	0/0	t0016	6128	4	4	0	0	0	0	copy fasta	KIAA0513	chr16	85022795	85099218
KIAA0513_chr16_85022795_85099218	0/0	t0017	6130	4	0	0	4	0	0	copy fasta	KIAA0513	chr16	85022795	85099218
KIAA0513_chr16_85022795_85099218	0/0	t0018	6130	3	0	1	0	2	0	copy fasta	KIAA0513	chr16	85022795	85099218
KIAA0513_chr16_85022795_85099218	0/0	t0019	6127	3	3	0	0	0	0	copy fasta	KIAA0513	chr16	85022795	85099218
KIAA0513_chr16_85022795_85099218	0/0	t0020	6131	3	0	0	3	0	0	copy fasta	KIAA0513	chr16	85022795	85099218
KIAA0513_chr16_85022795_85099218	0/0	t0021	6129	3	0	0	2	0	1	copy fasta	KIAA0513	chr16	85022795	85099218
KIAA0513_chr16_85022795_85099218	0/1	t0022	6130	3	0	2	0	0	0	copy fasta	KIAA0513	chr16	85022795	85099218
KIAA0513_chr16_85022795_85099218	0/0	t0023	6130	3	3	0	0	0	0	copy fasta	KIAA0513	chr16	85022795	85099218
KIAA0513_chr16_85022795_85099218	0/0	t0024	6129	3	3	0	0	0	0	copy fasta	KIAA0513	chr16	85022795	85099218
KIAA0513_chr16_85022795_85099218	0/0	t0025	6126	3	0	1	0	2	0	copy fasta	KIAA0513	chr16	85022795	85099218
KIAA0513_chr16_85022795_85099218	0/0	t0026	6130	3	0	0	3	0	0	copy fasta	KIAA0513	chr16	85022795	85099218
KIAA0513_chr16_85022795_85099218	0/0	t0027	6128	2	0	0	2	0	0	copy fasta	KIAA0513	chr16	85022795	85099218
KIAA0513_chr16_85022795_85099218	0/0	t0028	6130	2	0	0	2	0	0	copy fasta	KIAA0513	chr16	85022795	85099218
KIAA0513_chr16_85022795_85099218	0/0	t0029	6128	2	2	0	0	0	0	copy fasta	KIAA0513	chr16	85022795	85099218
KIAA0513_chr16_85022795_85099218	0/0	t0030	6130	2	2	0	0	0	0	copy fasta	KIAA0513	chr16	85022795	85099218
KIAA0513_chr16_85022795_85099218	0/0	t0031	6130	2	0	0	2	0	0	copy fasta	KIAA0513	chr16	85022795	85099218
KIAA0513_chr16_85022795_85099218	0/0	t0032	6129	2	0	0	2	0	0	copy fasta	KIAA0513	chr16	85022795	85099218
KIAA0513_chr16_85022795_85099218	0/0	t0033	6127	2	2	0	0	0	0	copy fasta	KIAA0513	chr16	85022795	85099218
KIAA0513_chr16_85022795_85099218	0/0	t0034	6127	2	1	1	0	0	0	copy fasta	KIAA0513	chr16	85022795	85099218
KIAA0513_chr16_85022795_85099218	0/0	t0035	6130	2	0	2	0	0	0	copy fasta	KIAA0513	chr16	85022795	85099218
KIAA0513_chr16_85022795_85099218	0/0	t0036	6130	2	0	0	0	2	0	copy fasta	KIAA0513	chr16	85022795	85099218
KIAA0513_chr16_85022795_85099218	0/0	t0037	6130	2	0	0	0	0	2	copy fasta	KIAA0513	chr16	85022795	85099218
KIAA0513_chr16_85022795_85099218	0/0	t0038	6128	2	2	0	0	0	0	copy fasta	KIAA0513	chr16	85022795	85099218
KIAA0513_chr16_85022795_85099218	0/0	t0039	6128	2	2	0	0	0	0	copy fasta	KIAA0513	chr16	85022795	85099218
KIAA0513_chr16_85022795_85099218	0/0	t0040	6126	2	0	2	0	0	0	copy fasta	KIAA0513	chr16	85022795	85099218
KIAA0513_chr16_85022795_85099218	0/0	t0041	6124	2	0	1	1	0	0	copy fasta	KIAA0513	chr16	85022795	85099218
KIAA0513_chr16_85022795_85099218	0/0	t0042	6127	2	2	0	0	0	0	copy fasta	KIAA0513	chr16	85022795	85099218
KIAA0513_chr16_85022795_85099218	0/0	t0043	6127	2	0	2	0	0	0	copy fasta	KIAA0513	chr16	85022795	85099218