JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KIAA0513_chr16_85022795_85099218	0/0	t0094	6130	1	0	0	1	0	0	copy fasta	KIAA0513	chr16	85022795	85099218
KIAA0513_chr16_85022795_85099218	0/0	t0095	6130	1	1	0	0	0	0	copy fasta	KIAA0513	chr16	85022795	85099218
KIAA0513_chr16_85022795_85099218	0/0	t0096	6125	1	1	0	0	0	0	copy fasta	KIAA0513	chr16	85022795	85099218
KIAA0513_chr16_85022795_85099218	0/0	t0097	6128	1	0	1	0	0	0	copy fasta	KIAA0513	chr16	85022795	85099218
KIAA0513_chr16_85022795_85099218	0/0	t0098	6126	1	0	0	1	0	0	copy fasta	KIAA0513	chr16	85022795	85099218
KIAA0513_chr16_85022795_85099218	0/0	t0099	6127	1	0	0	1	0	0	copy fasta	KIAA0513	chr16	85022795	85099218
KIAA0513_chr16_85022795_85099218	0/0	t0100	6129	1	0	0	1	0	0	copy fasta	KIAA0513	chr16	85022795	85099218
KIAA0513_chr16_85022795_85099218	0/0	t0101	6106	1	1	0	0	0	0	copy fasta	KIAA0513	chr16	85022795	85099218
KIAA0513_chr16_85022795_85099218	0/0	t0102	6128	1	0	0	0	0	1	copy fasta	KIAA0513	chr16	85022795	85099218
KIAA0513_chr16_85022795_85099218	0/0	t0103	6127	1	1	0	0	0	0	copy fasta	KIAA0513	chr16	85022795	85099218
KIAA0513_chr16_85022795_85099218	0/0	t0104	6126	1	0	0	1	0	0	copy fasta	KIAA0513	chr16	85022795	85099218
KIAA0513_chr16_85022795_85099218	0/0	t0105	6126	1	1	0	0	0	0	copy fasta	KIAA0513	chr16	85022795	85099218
KIAA0513_chr16_85022795_85099218	0/0	t0106	6128	1	1	0	0	0	0	copy fasta	KIAA0513	chr16	85022795	85099218
KIAA0513_chr16_85022795_85099218	0/0	t0107	6129	1	1	0	0	0	0	copy fasta	KIAA0513	chr16	85022795	85099218
KIAA0513_chr16_85022795_85099218	0/0	t0108	6127	1	1	0	0	0	0	copy fasta	KIAA0513	chr16	85022795	85099218
KIAA0513_chr16_85022795_85099218	0/0	t0109	6129	1	1	0	0	0	0	copy fasta	KIAA0513	chr16	85022795	85099218
KIAA0513_chr16_85022795_85099218	0/0	t0110	6126	1	0	1	0	0	0	copy fasta	KIAA0513	chr16	85022795	85099218
KIAA0513_chr16_85022795_85099218	0/0	t0111	6130	1	0	0	1	0	0	copy fasta	KIAA0513	chr16	85022795	85099218
KIAA0513_chr16_85022795_85099218	0/0	t0112	6130	1	0	0	1	0	0	copy fasta	KIAA0513	chr16	85022795	85099218
KIAA0513_chr16_85022795_85099218	0/0	t0113	6130	1	0	0	1	0	0	copy fasta	KIAA0513	chr16	85022795	85099218
KIAA0586_chr14_58422719_58556297	1/0	t0001	3912	80	7	12	51	4	5	copy fasta	KIAA0586	chr14	58422719	58556297
KIAA0586_chr14_58422719_58556297	0/0	t0002	3908	71	4	10	45	1	11	copy fasta	KIAA0586	chr14	58422719	58556297
KIAA0586_chr14_58422719_58556297	0/1	t0003	3912	54	12	18	17	2	4	copy fasta	KIAA0586	chr14	58422719	58556297
KIAA0586_chr14_58422719_58556297	0/0	t0004	3908	20	13	1	4	0	2	copy fasta	KIAA0586	chr14	58422719	58556297
KIAA0586_chr14_58422719_58556297	0/0	t0005	3907	18	13	2	0	0	3	copy fasta	KIAA0586	chr14	58422719	58556297
KIAA0586_chr14_58422719_58556297	0/0	t0006	3907	6	6	0	0	0	0	copy fasta	KIAA0586	chr14	58422719	58556297
KIAA0586_chr14_58422719_58556297	0/0	t0007	3909	5	5	0	0	0	0	copy fasta	KIAA0586	chr14	58422719	58556297
KIAA0586_chr14_58422719_58556297	0/0	t0008	3913	5	2	0	2	0	1	copy fasta	KIAA0586	chr14	58422719	58556297
KIAA0586_chr14_58422719_58556297	0/0	t0009	3909	3	0	0	3	0	0	copy fasta	KIAA0586	chr14	58422719	58556297
KIAA0586_chr14_58422719_58556297	0/0	t0010	3913	3	0	0	1	0	2	copy fasta	KIAA0586	chr14	58422719	58556297
KIAA0586_chr14_58422719_58556297	0/0	t0011	3913	3	0	0	3	0	0	copy fasta	KIAA0586	chr14	58422719	58556297
KIAA0586_chr14_58422719_58556297	0/0	t0012	3908	3	0	0	3	0	0	copy fasta	KIAA0586	chr14	58422719	58556297
KIAA0586_chr14_58422719_58556297	0/0	t0013	3909	2	2	0	0	0	0	copy fasta	KIAA0586	chr14	58422719	58556297
KIAA0586_chr14_58422719_58556297	0/0	t0014	3909	1	1	0	0	0	0	copy fasta	KIAA0586	chr14	58422719	58556297
KIAA0586_chr14_58422719_58556297	0/0	t0015	3908	1	0	0	0	0	1	copy fasta	KIAA0586	chr14	58422719	58556297
KIAA0586_chr14_58422719_58556297	0/0	t0016	3908	1	1	0	0	0	0	copy fasta	KIAA0586	chr14	58422719	58556297
KIAA0586_chr14_58422719_58556297	0/0	t0017	3912	1	0	1	0	0	0	copy fasta	KIAA0586	chr14	58422719	58556297
KIAA0586_chr14_58422719_58556297	0/0	t0018	3896	1	0	0	1	0	0	copy fasta	KIAA0586	chr14	58422719	58556297
KIAA0586_chr14_58422719_58556297	0/0	t0019	3908	1	0	0	0	0	1	copy fasta	KIAA0586	chr14	58422719	58556297
KIAA0586_chr14_58422719_58556297	0/0	t0020	3912	1	0	0	0	0	1	copy fasta	KIAA0586	chr14	58422719	58556297
KIAA0586_chr14_58422719_58556297	0/0	t0021	3908	1	0	0	0	1	0	copy fasta	KIAA0586	chr14	58422719	58556297
KIAA0586_chr14_58422719_58556297	0/0	t0022	3908	1	0	1	0	0	0	copy fasta	KIAA0586	chr14	58422719	58556297
KIAA0586_chr14_58422719_58556297	0/0	t0023	3907	1	0	0	1	0	0	copy fasta	KIAA0586	chr14	58422719	58556297
KIAA0586_chr14_58422719_58556297	0/0	t0024	3911	1	0	1	0	0	0	copy fasta	KIAA0586	chr14	58422719	58556297
KIAA0586_chr14_58422719_58556297	0/0	t0025	3912	1	1	0	0	0	0	copy fasta	KIAA0586	chr14	58422719	58556297
KIAA0586_chr14_58422719_58556297	0/0	t0026	3908	1	1	0	0	0	0	copy fasta	KIAA0586	chr14	58422719	58556297
KIAA0586_chr14_58422719_58556297	0/0	t0027	3912	1	0	0	0	1	0	copy fasta	KIAA0586	chr14	58422719	58556297
KIAA0586_chr14_58422719_58556297	0/0	t0028	3908	1	0	0	1	0	0	copy fasta	KIAA0586	chr14	58422719	58556297
KIAA0586_chr14_58422719_58556297	0/0	t0029	3912	1	0	0	0	1	0	copy fasta	KIAA0586	chr14	58422719	58556297
KIAA0586_chr14_58422719_58556297	0/0	t0030	3908	1	0	1	0	0	0	copy fasta	KIAA0586	chr14	58422719	58556297