JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KIAA0586_chr14_58422719_58556297	0/0	t0031	3909	1	1	0	0	0	0	copy fasta	KIAA0586	chr14	58422719	58556297
KIAA0586_chr14_58422719_58556297	0/0	t0032	3908	1	1	0	0	0	0	copy fasta	KIAA0586	chr14	58422719	58556297
KIAA0586_chr14_58422719_58556297	0/0	t0033	3909	1	1	0	0	0	0	copy fasta	KIAA0586	chr14	58422719	58556297
KIAA0586_chr14_58422719_58556297	0/0	t0034	3908	1	0	1	0	0	0	copy fasta	KIAA0586	chr14	58422719	58556297
KIAA0586_chr14_58422719_58556297	0/0	t0035	3909	1	0	0	1	0	0	copy fasta	KIAA0586	chr14	58422719	58556297
KIAA0586_chr14_58422719_58556297	0/0	t0036	3912	1	0	0	0	0	1	copy fasta	KIAA0586	chr14	58422719	58556297
KIAA0586_chr14_58422719_58556297	0/0	t0037	3911	1	0	0	1	0	0	copy fasta	KIAA0586	chr14	58422719	58556297
KIAA0586_chr14_58422719_58556297	0/0	t0038	3910	1	1	0	0	0	0	copy fasta	KIAA0586	chr14	58422719	58556297
KIAA0586_chr14_58422719_58556297	0/0	t0039	3908	1	1	0	0	0	0	copy fasta	KIAA0586	chr14	58422719	58556297
KIAA0586_chr14_58422719_58556297	0/0	t0040	3908	1	1	0	0	0	0	copy fasta	KIAA0586	chr14	58422719	58556297
KIAA0753_chr17_6573147_6645711	1/0	t0001	1744	114	19	20	58	4	12	copy fasta	KIAA0753	chr17	6573147	6645711
KIAA0753_chr17_6573147_6645711	0/0	t0002	1744	100	25	16	54	0	5	copy fasta	KIAA0753	chr17	6573147	6645711
KIAA0753_chr17_6573147_6645711	0/1	t0003	1744	89	2	15	58	5	8	copy fasta	KIAA0753	chr17	6573147	6645711
KIAA0753_chr17_6573147_6645711	0/0	t0004	1744	39	31	5	0	0	3	copy fasta	KIAA0753	chr17	6573147	6645711
KIAA0753_chr17_6573147_6645711	0/0	t0005	1745	17	11	2	1	2	1	copy fasta	KIAA0753	chr17	6573147	6645711
KIAA0753_chr17_6573147_6645711	0/0	t0006	1744	2	2	0	0	0	0	copy fasta	KIAA0753	chr17	6573147	6645711
KIAA0753_chr17_6573147_6645711	0/0	t0007	1744	1	0	0	1	0	0	copy fasta	KIAA0753	chr17	6573147	6645711
KIAA0753_chr17_6573147_6645711	0/0	t0008	1744	1	0	1	0	0	0	copy fasta	KIAA0753	chr17	6573147	6645711
KIAA0753_chr17_6573147_6645711	0/0	t0009	1744	1	0	0	0	0	1	copy fasta	KIAA0753	chr17	6573147	6645711
KIAA0753_chr17_6573147_6645711	0/0	t0010	1744	1	0	0	0	0	1	copy fasta	KIAA0753	chr17	6573147	6645711
KIAA0753_chr17_6573147_6645711	0/0	t0011	1744	1	1	0	0	0	0	copy fasta	KIAA0753	chr17	6573147	6645711
KIAA0753_chr17_6573147_6645711	0/0	t0012	1744	1	1	0	0	0	0	copy fasta	KIAA0753	chr17	6573147	6645711
KIAA0753_chr17_6573147_6645711	0/0	t0013	1744	1	0	1	0	0	0	copy fasta	KIAA0753	chr17	6573147	6645711
KIAA0753_chr17_6573147_6645711	0/0	t0014	1744	1	0	0	0	0	1	copy fasta	KIAA0753	chr17	6573147	6645711
KIAA0753_chr17_6573147_6645711	0/0	t0015	1485	1	0	0	0	1	0	copy fasta	KIAA0753	chr17	6573147	6645711
KIAA0825_chr5_94145851_94623604	0/0	t0001	3414	3	3	0	0	0	0	copy fasta	KIAA0825	chr5	94145851	94623604
KIAA0825_chr5_94145851_94623604	0/0	t0002	3413	2	1	0	1	0	0	copy fasta	KIAA0825	chr5	94145851	94623604
KIAA0825_chr5_94145851_94623604	0/0	t0003	3406	1	1	0	0	0	0	copy fasta	KIAA0825	chr5	94145851	94623604
KIAA0825_chr5_94145851_94623604	0/0	t0004	3434	1	1	0	0	0	0	copy fasta	KIAA0825	chr5	94145851	94623604
KIAA0825_chr5_94145851_94623604	0/0	t0005	3414	1	1	0	0	0	0	copy fasta	KIAA0825	chr5	94145851	94623604
KIAA0825_chr5_94145851_94623604	0/0	t0006	3394	1	0	0	0	0	1	copy fasta	KIAA0825	chr5	94145851	94623604
KIAA0825_chr5_94145851_94623604	0/0	t0007	3414	1	0	1	0	0	0	copy fasta	KIAA0825	chr5	94145851	94623604
KIAA0825_chr5_94145851_94623604	0/0	t0008	3423	1	0	0	1	0	0	copy fasta	KIAA0825	chr5	94145851	94623604
KIAA0825_chr5_94145851_94623604	0/0	t0009	3399	1	0	1	0	0	0	copy fasta	KIAA0825	chr5	94145851	94623604
KIAA0825_chr5_94145851_94623604	0/0	t0010	3413	1	1	0	0	0	0	copy fasta	KIAA0825	chr5	94145851	94623604
KIAA0825_chr5_94145851_94623604	0/0	t0011	3413	1	1	0	0	0	0	copy fasta	KIAA0825	chr5	94145851	94623604
KIAA0825_chr5_94145851_94623604	0/0	t0012	3414	1	0	0	1	0	0	copy fasta	KIAA0825	chr5	94145851	94623604
KIAA0825_chr5_94145851_94623604	0/0	t0013	3419	1	0	0	0	0	1	copy fasta	KIAA0825	chr5	94145851	94623604
KIAA0825_chr5_94145851_94623604	0/0	t0014	3443	1	0	1	0	0	0	copy fasta	KIAA0825	chr5	94145851	94623604
KIAA0825_chr5_94145851_94623604	0/0	t0015	3397	1	1	0	0	0	0	copy fasta	KIAA0825	chr5	94145851	94623604
KIAA0825_chr5_94145851_94623604	0/0	t0016	3400	1	0	0	1	0	0	copy fasta	KIAA0825	chr5	94145851	94623604
KIAA0825_chr5_94145851_94623604	0/0	t0017	3401	1	1	0	0	0	0	copy fasta	KIAA0825	chr5	94145851	94623604
KIAA0825_chr5_94145851_94623604	0/0	t0018	3390	1	0	0	0	0	1	copy fasta	KIAA0825	chr5	94145851	94623604
KIAA0825_chr5_94145851_94623604	0/0	t0019	3399	1	1	0	0	0	0	copy fasta	KIAA0825	chr5	94145851	94623604
KIAA0825_chr5_94145851_94623604	0/0	t0020	3401	1	1	0	0	0	0	copy fasta	KIAA0825	chr5	94145851	94623604
KIAA0825_chr5_94145851_94623604	0/0	t0021	3402	1	0	0	1	0	0	copy fasta	KIAA0825	chr5	94145851	94623604
KIAA0825_chr5_94145851_94623604	0/0	t0022	3405	1	1	0	0	0	0	copy fasta	KIAA0825	chr5	94145851	94623604
KIAA0825_chr5_94145851_94623604	0/0	t0023	3405	1	0	0	0	0	1	copy fasta	KIAA0825	chr5	94145851	94623604
KIAA0825_chr5_94145851_94623604	0/0	t0024	3414	1	0	1	0	0	0	copy fasta	KIAA0825	chr5	94145851	94623604
KIAA0825_chr5_94145851_94623604	0/0	t0025	3424	1	0	0	0	0	1	copy fasta	KIAA0825	chr5	94145851	94623604