JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KIAA0825_chr5_94145851_94623604	0/0	t0026	3413	1	0	1	0	0	0	copy fasta	KIAA0825	chr5	94145851	94623604
KIAA0825_chr5_94145851_94623604	0/0	t0027	3413	1	1	0	0	0	0	copy fasta	KIAA0825	chr5	94145851	94623604
KIAA0825_chr5_94145851_94623604	0/0	t0028	3414	1	1	0	0	0	0	copy fasta	KIAA0825	chr5	94145851	94623604
KIAA0825_chr5_94145851_94623604	0/0	t0029	3417	1	0	0	1	0	0	copy fasta	KIAA0825	chr5	94145851	94623604
KIAA0825_chr5_94145851_94623604	0/0	t0030	3419	1	1	0	0	0	0	copy fasta	KIAA0825	chr5	94145851	94623604
KIAA0825_chr5_94145851_94623604	0/0	t0031	3421	1	1	0	0	0	0	copy fasta	KIAA0825	chr5	94145851	94623604
KIAA0825_chr5_94145851_94623604	0/0	t0032	3422	1	1	0	0	0	0	copy fasta	KIAA0825	chr5	94145851	94623604
KIAA0825_chr5_94145851_94623604	0/0	t0033	3442	1	1	0	0	0	0	copy fasta	KIAA0825	chr5	94145851	94623604
KIAA0825_chr5_94145851_94623604	0/0	t0034	3422	1	1	0	0	0	0	copy fasta	KIAA0825	chr5	94145851	94623604
KIAA0825_chr5_94145851_94623604	0/0	t0035	3398	1	0	1	0	0	0	copy fasta	KIAA0825	chr5	94145851	94623604
KIAA0825_chr5_94145851_94623604	0/0	t0036	3414	1	1	0	0	0	0	copy fasta	KIAA0825	chr5	94145851	94623604
KIAA0825_chr5_94145851_94623604	0/0	t0037	3413	1	1	0	0	0	0	copy fasta	KIAA0825	chr5	94145851	94623604
KIAA0825_chr5_94145851_94623604	0/0	t0038	3399	1	0	1	0	0	0	copy fasta	KIAA0825	chr5	94145851	94623604
KIAA0825_chr5_94145851_94623604	0/0	t0039	3414	1	0	1	0	0	0	copy fasta	KIAA0825	chr5	94145851	94623604
KIAA0825_chr5_94145851_94623604	0/0	t0040	3392	1	0	0	1	0	0	copy fasta	KIAA0825	chr5	94145851	94623604
KIAA0825_chr5_94145851_94623604	0/0	t0041	3393	1	0	1	0	0	0	copy fasta	KIAA0825	chr5	94145851	94623604
KIAA0825_chr5_94145851_94623604	0/0	t0042	3390	1	1	0	0	0	0	copy fasta	KIAA0825	chr5	94145851	94623604
KIAA0825_chr5_94145851_94623604	0/0	t0043	3392	1	0	0	1	0	0	copy fasta	KIAA0825	chr5	94145851	94623604
KIAA0825_chr5_94145851_94623604	0/0	t0044	3383	1	1	0	0	0	0	copy fasta	KIAA0825	chr5	94145851	94623604
KIAA0825_chr5_94145851_94623604	0/0	t0045	3413	1	0	0	1	0	0	copy fasta	KIAA0825	chr5	94145851	94623604
KIAA0825_chr5_94145851_94623604	0/0	t0046	3403	1	0	1	0	0	0	copy fasta	KIAA0825	chr5	94145851	94623604
KIAA0825_chr5_94145851_94623604	0/0	t0047	3404	1	0	0	0	0	1	copy fasta	KIAA0825	chr5	94145851	94623604
KIAA0825_chr5_94145851_94623604	0/0	t0048	3416	1	0	0	1	0	0	copy fasta	KIAA0825	chr5	94145851	94623604
KIAA0825_chr5_94145851_94623604	0/0	t0049	3424	1	1	0	0	0	0	copy fasta	KIAA0825	chr5	94145851	94623604
KIAA0825_chr5_94145851_94623604	0/0	t0050	3395	1	1	0	0	0	0	copy fasta	KIAA0825	chr5	94145851	94623604
KIAA0825_chr5_94145851_94623604	0/0	t0051	3383	1	1	0	0	0	0	copy fasta	KIAA0825	chr5	94145851	94623604
KIAA0930_chr22_45187244_45245894	0/0	t0001	5258	21	3	4	8	2	4	copy fasta	KIAA0930	chr22	45187244	45245894
KIAA0930_chr22_45187244_45245894	0/0	t0002	5259	16	1	3	8	1	3	copy fasta	KIAA0930	chr22	45187244	45245894
KIAA0930_chr22_45187244_45245894	0/0	t0003	5241	14	3	1	9	0	1	copy fasta	KIAA0930	chr22	45187244	45245894
KIAA0930_chr22_45187244_45245894	0/0	t0004	5257	13	1	2	9	0	1	copy fasta	KIAA0930	chr22	45187244	45245894
KIAA0930_chr22_45187244_45245894	0/0	t0005	5250	11	10	1	0	0	0	copy fasta	KIAA0930	chr22	45187244	45245894
KIAA0930_chr22_45187244_45245894	0/0	t0006	5259	8	1	1	5	1	0	copy fasta	KIAA0930	chr22	45187244	45245894
KIAA0930_chr22_45187244_45245894	0/0	t0007	5257	8	1	2	0	3	2	copy fasta	KIAA0930	chr22	45187244	45245894
KIAA0930_chr22_45187244_45245894	0/0	t0008	5241	7	0	6	1	0	0	copy fasta	KIAA0930	chr22	45187244	45245894
KIAA0930_chr22_45187244_45245894	0/0	t0009	5247	7	0	4	0	1	2	copy fasta	KIAA0930	chr22	45187244	45245894
KIAA0930_chr22_45187244_45245894	0/0	t0010	5237	7	0	1	5	1	0	copy fasta	KIAA0930	chr22	45187244	45245894
KIAA0930_chr22_45187244_45245894	0/0	t0011	5237	7	0	0	7	0	0	copy fasta	KIAA0930	chr22	45187244	45245894
KIAA0930_chr22_45187244_45245894	0/0	t0012	5257	6	0	1	2	2	1	copy fasta	KIAA0930	chr22	45187244	45245894
KIAA0930_chr22_45187244_45245894	0/0	t0013	5241	6	1	1	4	0	0	copy fasta	KIAA0930	chr22	45187244	45245894
KIAA0930_chr22_45187244_45245894	0/0	t0014	5258	5	1	0	4	0	0	copy fasta	KIAA0930	chr22	45187244	45245894
KIAA0930_chr22_45187244_45245894	0/0	t0015	5258	5	0	0	5	0	0	copy fasta	KIAA0930	chr22	45187244	45245894
KIAA0930_chr22_45187244_45245894	0/0	t0016	5247	5	0	0	5	0	0	copy fasta	KIAA0930	chr22	45187244	45245894
KIAA0930_chr22_45187244_45245894	0/0	t0017	5250	4	3	0	1	0	0	copy fasta	KIAA0930	chr22	45187244	45245894
KIAA0930_chr22_45187244_45245894	0/0	t0018	5249	4	0	0	4	0	0	copy fasta	KIAA0930	chr22	45187244	45245894
KIAA0930_chr22_45187244_45245894	0/0	t0019	5260	4	1	0	2	0	1	copy fasta	KIAA0930	chr22	45187244	45245894
KIAA0930_chr22_45187244_45245894	0/0	t0020	5259	4	0	4	0	0	0	copy fasta	KIAA0930	chr22	45187244	45245894
KIAA0930_chr22_45187244_45245894	0/0	t0021	5258	4	2	2	0	0	0	copy fasta	KIAA0930	chr22	45187244	45245894
KIAA0930_chr22_45187244_45245894	0/0	t0022	5258	4	0	3	0	1	0	copy fasta	KIAA0930	chr22	45187244	45245894
KIAA0930_chr22_45187244_45245894	0/0	t0023	5258	4	2	1	0	1	0	copy fasta	KIAA0930	chr22	45187244	45245894
KIAA0930_chr22_45187244_45245894	0/0	t0024	5257	4	0	0	4	0	0	copy fasta	KIAA0930	chr22	45187244	45245894