JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KIAA0930_chr22_45187244_45245894	0/0	t0025	5246	4	3	0	1	0	0	copy fasta	KIAA0930	chr22	45187244	45245894
KIAA0930_chr22_45187244_45245894	0/0	t0026	5247	4	0	0	4	0	0	copy fasta	KIAA0930	chr22	45187244	45245894
KIAA0930_chr22_45187244_45245894	0/0	t0027	5246	4	0	1	1	2	0	copy fasta	KIAA0930	chr22	45187244	45245894
KIAA0930_chr22_45187244_45245894	0/0	t0028	5258	3	1	0	1	0	1	copy fasta	KIAA0930	chr22	45187244	45245894
KIAA0930_chr22_45187244_45245894	0/0	t0029	5256	3	0	2	1	0	0	copy fasta	KIAA0930	chr22	45187244	45245894
KIAA0930_chr22_45187244_45245894	0/0	t0030	5252	3	3	0	0	0	0	copy fasta	KIAA0930	chr22	45187244	45245894
KIAA0930_chr22_45187244_45245894	0/0	t0031	5257	3	0	3	0	0	0	copy fasta	KIAA0930	chr22	45187244	45245894
KIAA0930_chr22_45187244_45245894	0/0	t0032	5256	3	0	3	0	0	0	copy fasta	KIAA0930	chr22	45187244	45245894
KIAA0930_chr22_45187244_45245894	0/0	t0033	5258	3	0	0	3	0	0	copy fasta	KIAA0930	chr22	45187244	45245894
KIAA0930_chr22_45187244_45245894	0/0	t0034	5264	3	0	0	3	0	0	copy fasta	KIAA0930	chr22	45187244	45245894
KIAA0930_chr22_45187244_45245894	0/0	t0035	5249	3	3	0	0	0	0	copy fasta	KIAA0930	chr22	45187244	45245894
KIAA0930_chr22_45187244_45245894	0/0	t0036	5250	3	3	0	0	0	0	copy fasta	KIAA0930	chr22	45187244	45245894
KIAA0930_chr22_45187244_45245894	0/0	t0037	5257	2	1	1	0	0	0	copy fasta	KIAA0930	chr22	45187244	45245894
KIAA0930_chr22_45187244_45245894	0/0	t0038	5254	2	2	0	0	0	0	copy fasta	KIAA0930	chr22	45187244	45245894
KIAA0930_chr22_45187244_45245894	0/0	t0039	5250	2	0	0	2	0	0	copy fasta	KIAA0930	chr22	45187244	45245894
KIAA0930_chr22_45187244_45245894	0/0	t0040	5249	2	0	0	2	0	0	copy fasta	KIAA0930	chr22	45187244	45245894
KIAA0930_chr22_45187244_45245894	0/0	t0041	5260	2	0	1	0	0	1	copy fasta	KIAA0930	chr22	45187244	45245894
KIAA0930_chr22_45187244_45245894	0/0	t0042	5251	2	1	0	1	0	0	copy fasta	KIAA0930	chr22	45187244	45245894
KIAA0930_chr22_45187244_45245894	0/0	t0043	5251	2	0	2	0	0	0	copy fasta	KIAA0930	chr22	45187244	45245894
KIAA0930_chr22_45187244_45245894	0/0	t0044	5246	2	0	0	0	0	2	copy fasta	KIAA0930	chr22	45187244	45245894
KIAA0930_chr22_45187244_45245894	0/0	t0045	5240	2	2	0	0	0	0	copy fasta	KIAA0930	chr22	45187244	45245894
KIAA0930_chr22_45187244_45245894	0/0	t0046	5240	2	0	0	2	0	0	copy fasta	KIAA0930	chr22	45187244	45245894
KIAA0930_chr22_45187244_45245894	0/0	t0047	5224	2	2	0	0	0	0	copy fasta	KIAA0930	chr22	45187244	45245894
KIAA0930_chr22_45187244_45245894	0/0	t0048	5240	2	0	1	1	0	0	copy fasta	KIAA0930	chr22	45187244	45245894
KIAA0930_chr22_45187244_45245894	0/0	t0049	5259	2	0	2	0	0	0	copy fasta	KIAA0930	chr22	45187244	45245894
KIAA0930_chr22_45187244_45245894	0/0	t0050	5258	2	1	0	0	0	1	copy fasta	KIAA0930	chr22	45187244	45245894
KIAA0930_chr22_45187244_45245894	0/0	t0051	5257	2	0	1	0	0	1	copy fasta	KIAA0930	chr22	45187244	45245894
KIAA0930_chr22_45187244_45245894	0/0	t0052	5260	2	0	0	2	0	0	copy fasta	KIAA0930	chr22	45187244	45245894
KIAA0930_chr22_45187244_45245894	0/0	t0053	5264	2	0	0	2	0	0	copy fasta	KIAA0930	chr22	45187244	45245894
KIAA0930_chr22_45187244_45245894	0/0	t0054	5262	2	0	0	2	0	0	copy fasta	KIAA0930	chr22	45187244	45245894
KIAA0930_chr22_45187244_45245894	0/0	t0055	5262	2	0	0	2	0	0	copy fasta	KIAA0930	chr22	45187244	45245894
KIAA0930_chr22_45187244_45245894	0/0	t0056	5261	2	0	0	2	0	0	copy fasta	KIAA0930	chr22	45187244	45245894
KIAA0930_chr22_45187244_45245894	0/0	t0057	5248	2	1	0	0	1	0	copy fasta	KIAA0930	chr22	45187244	45245894
KIAA0930_chr22_45187244_45245894	0/0	t0058	5247	2	0	0	2	0	0	copy fasta	KIAA0930	chr22	45187244	45245894
KIAA0930_chr22_45187244_45245894	0/0	t0059	5247	2	0	2	0	0	0	copy fasta	KIAA0930	chr22	45187244	45245894
KIAA0930_chr22_45187244_45245894	0/0	t0060	5247	2	2	0	0	0	0	copy fasta	KIAA0930	chr22	45187244	45245894
KIAA0930_chr22_45187244_45245894	0/0	t0061	5246	2	2	0	0	0	0	copy fasta	KIAA0930	chr22	45187244	45245894
KIAA0930_chr22_45187244_45245894	0/0	t0062	5260	2	0	0	2	0	0	copy fasta	KIAA0930	chr22	45187244	45245894
KIAA0930_chr22_45187244_45245894	0/0	t0063	5247	2	0	0	2	0	0	copy fasta	KIAA0930	chr22	45187244	45245894
KIAA0930_chr22_45187244_45245894	0/0	t0064	5246	2	0	0	2	0	0	copy fasta	KIAA0930	chr22	45187244	45245894
KIAA0930_chr22_45187244_45245894	0/0	t0065	5237	2	0	0	0	0	2	copy fasta	KIAA0930	chr22	45187244	45245894
KIAA0930_chr22_45187244_45245894	0/0	t0066	5247	1	0	0	1	0	0	copy fasta	KIAA0930	chr22	45187244	45245894
KIAA0930_chr22_45187244_45245894	0/0	t0067	5248	1	0	0	0	0	1	copy fasta	KIAA0930	chr22	45187244	45245894
KIAA0930_chr22_45187244_45245894	0/0	t0068	5236	1	1	0	0	0	0	copy fasta	KIAA0930	chr22	45187244	45245894
KIAA0930_chr22_45187244_45245894	0/0	t0069	5274	1	1	0	0	0	0	copy fasta	KIAA0930	chr22	45187244	45245894
KIAA0930_chr22_45187244_45245894	0/0	t0070	5240	1	0	1	0	0	0	copy fasta	KIAA0930	chr22	45187244	45245894
KIAA0930_chr22_45187244_45245894	1/0	t0071	5124	1	0	0	0	0	0	copy fasta	KIAA0930	chr22	45187244	45245894
KIAA0930_chr22_45187244_45245894	0/0	t0072	5246	1	0	0	1	0	0	copy fasta	KIAA0930	chr22	45187244	45245894
KIAA0930_chr22_45187244_45245894	0/0	t0073	5264	1	1	0	0	0	0	copy fasta	KIAA0930	chr22	45187244	45245894
KIAA0930_chr22_45187244_45245894	0/0	t0074	5254	1	1	0	0	0	0	copy fasta	KIAA0930	chr22	45187244	45245894