Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
AP1AR_chr4_112226787_112278110	0/0	t0018	5007	2	0	1	0	1	0	copy fasta	AP1AR	chr4	112226787	112278110
AP1AR_chr4_112226787_112278110	0/0	t0019	5007	2	0	0	2	0	0	copy fasta	AP1AR	chr4	112226787	112278110
AP1AR_chr4_112226787_112278110	0/0	t0020	5007	1	0	0	0	0	1	copy fasta	AP1AR	chr4	112226787	112278110
AP1AR_chr4_112226787_112278110	0/0	t0021	5015	1	0	0	1	0	0	copy fasta	AP1AR	chr4	112226787	112278110
AP1AR_chr4_112226787_112278110	0/0	t0022	5007	1	1	0	0	0	0	copy fasta	AP1AR	chr4	112226787	112278110
AP1AR_chr4_112226787_112278110	0/0	t0023	5007	1	0	0	0	0	1	copy fasta	AP1AR	chr4	112226787	112278110
AP1AR_chr4_112226787_112278110	0/0	t0024	5013	1	0	0	1	0	0	copy fasta	AP1AR	chr4	112226787	112278110
AP1AR_chr4_112226787_112278110	0/0	t0025	5021	1	0	0	1	0	0	copy fasta	AP1AR	chr4	112226787	112278110
AP1AR_chr4_112226787_112278110	0/0	t0026	5015	1	0	0	0	0	1	copy fasta	AP1AR	chr4	112226787	112278110
AP1AR_chr4_112226787_112278110	0/0	t0027	5013	1	0	1	0	0	0	copy fasta	AP1AR	chr4	112226787	112278110
AP1AR_chr4_112226787_112278110	0/0	t0028	5009	1	1	0	0	0	0	copy fasta	AP1AR	chr4	112226787	112278110
AP1AR_chr4_112226787_112278110	0/0	t0029	5009	1	0	1	0	0	0	copy fasta	AP1AR	chr4	112226787	112278110
AP1AR_chr4_112226787_112278110	0/0	t0030	5009	1	1	0	0	0	0	copy fasta	AP1AR	chr4	112226787	112278110
AP1AR_chr4_112226787_112278110	0/0	t0031	5009	1	0	0	1	0	0	copy fasta	AP1AR	chr4	112226787	112278110
AP1AR_chr4_112226787_112278110	0/0	t0032	5009	1	0	0	1	0	0	copy fasta	AP1AR	chr4	112226787	112278110
AP1AR_chr4_112226787_112278110	0/0	t0033	5009	1	0	0	1	0	0	copy fasta	AP1AR	chr4	112226787	112278110
AP1AR_chr4_112226787_112278110	0/0	t0034	5009	1	0	1	0	0	0	copy fasta	AP1AR	chr4	112226787	112278110
AP1AR_chr4_112226787_112278110	0/0	t0035	5007	1	1	0	0	0	0	copy fasta	AP1AR	chr4	112226787	112278110
AP1AR_chr4_112226787_112278110	0/0	t0036	5007	1	0	1	0	0	0	copy fasta	AP1AR	chr4	112226787	112278110
AP1AR_chr4_112226787_112278110	0/0	t0037	5007	1	0	0	1	0	0	copy fasta	AP1AR	chr4	112226787	112278110
AP1AR_chr4_112226787_112278110	0/0	t0038	5007	1	0	0	1	0	0	copy fasta	AP1AR	chr4	112226787	112278110
AP1AR_chr4_112226787_112278110	0/0	t0039	5007	1	0	0	0	0	1	copy fasta	AP1AR	chr4	112226787	112278110
AP1AR_chr4_112226787_112278110	0/0	t0040	5009	1	0	0	1	0	0	copy fasta	AP1AR	chr4	112226787	112278110
AP1B1_chr22_29322680_29393570	1/1	t0001	1316	316	51	55	160	12	36	copy fasta	AP1B1	chr22	29322680	29393570
AP1B1_chr22_29322680_29393570	0/0	t0002	1316	16	11	0	2	1	2	copy fasta	AP1B1	chr22	29322680	29393570
AP1B1_chr22_29322680_29393570	0/0	t0003	1316	10	7	3	0	0	0	copy fasta	AP1B1	chr22	29322680	29393570
AP1B1_chr22_29322680_29393570	0/0	t0004	1316	9	8	1	0	0	0	copy fasta	AP1B1	chr22	29322680	29393570
AP1B1_chr22_29322680_29393570	0/0	t0005	1316	8	4	0	2	0	2	copy fasta	AP1B1	chr22	29322680	29393570
AP1B1_chr22_29322680_29393570	0/0	t0006	1316	5	5	0	0	0	0	copy fasta	AP1B1	chr22	29322680	29393570
AP1B1_chr22_29322680_29393570	0/0	t0007	1316	4	3	1	0	0	0	copy fasta	AP1B1	chr22	29322680	29393570
AP1B1_chr22_29322680_29393570	0/0	t0008	1316	2	0	0	2	0	0	copy fasta	AP1B1	chr22	29322680	29393570
AP1B1_chr22_29322680_29393570	0/0	t0009	1316	2	0	0	2	0	0	copy fasta	AP1B1	chr22	29322680	29393570
AP1B1_chr22_29322680_29393570	0/0	t0010	1316	1	1	0	0	0	0	copy fasta	AP1B1	chr22	29322680	29393570
AP1B1_chr22_29322680_29393570	0/0	t0011	1316	1	1	0	0	0	0	copy fasta	AP1B1	chr22	29322680	29393570
AP1B1_chr22_29322680_29393570	0/0	t0012	1316	1	1	0	0	0	0	copy fasta	AP1B1	chr22	29322680	29393570
AP1B1_chr22_29322680_29393570	0/0	t0013	1316	1	1	0	0	0	0	copy fasta	AP1B1	chr22	29322680	29393570
AP1B1_chr22_29322680_29393570	0/0	t0014	1316	1	1	0	0	0	0	copy fasta	AP1B1	chr22	29322680	29393570
AP1B1_chr22_29322680_29393570	0/0	t0015	1316	1	0	0	0	1	0	copy fasta	AP1B1	chr22	29322680	29393570
AP1G1_chr16_71724000_71813834	0/0	t0001	4135	58	5	6	30	2	15	copy fasta	AP1G1	chr16	71724000	71813834
AP1G1_chr16_71724000_71813834	0/0	t0002	4134	57	11	12	27	2	5	copy fasta	AP1G1	chr16	71724000	71813834
AP1G1_chr16_71724000_71813834	0/0	t0003	4135	30	3	7	17	0	3	copy fasta	AP1G1	chr16	71724000	71813834
AP1G1_chr16_71724000_71813834	1/0	t0004	4134	28	13	7	4	3	0	copy fasta	AP1G1	chr16	71724000	71813834
AP1G1_chr16_71724000_71813834	0/0	t0005	4136	25	18	2	1	1	3	copy fasta	AP1G1	chr16	71724000	71813834
AP1G1_chr16_71724000_71813834	0/0	t0006	4135	17	0	12	3	0	2	copy fasta	AP1G1	chr16	71724000	71813834
AP1G1_chr16_71724000_71813834	0/0	t0007	4136	15	1	8	2	3	1	copy fasta	AP1G1	chr16	71724000	71813834
AP1G1_chr16_71724000_71813834	0/0	t0008	4133	13	12	1	0	0	0	copy fasta	AP1G1	chr16	71724000	71813834
AP1G1_chr16_71724000_71813834	0/0	t0009	4137	11	0	3	4	2	2	copy fasta	AP1G1	chr16	71724000	71813834
AP1G1_chr16_71724000_71813834	0/0	t0010	4133	8	7	1	0	0	0	copy fasta	AP1G1	chr16	71724000	71813834
AP1G1_chr16_71724000_71813834	0/0	t0011	4134	8	0	0	8	0	0	copy fasta	AP1G1	chr16	71724000	71813834
AP1G1_chr16_71724000_71813834	0/0	t0012	4134	6	0	0	6	0	0	copy fasta	AP1G1	chr16	71724000	71813834