JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KIAA0930_chr22_45187244_45245894	0/0	t0175	5249	1	1	0	0	0	0	copy fasta	KIAA0930	chr22	45187244	45245894
KIAA0930_chr22_45187244_45245894	0/0	t0176	5258	1	0	0	0	0	1	copy fasta	KIAA0930	chr22	45187244	45245894
KIAA0930_chr22_45187244_45245894	0/0	t0177	5258	1	0	1	0	0	0	copy fasta	KIAA0930	chr22	45187244	45245894
KIAA0930_chr22_45187244_45245894	0/0	t0178	5239	1	0	1	0	0	0	copy fasta	KIAA0930	chr22	45187244	45245894
KIAA0930_chr22_45187244_45245894	0/0	t0179	5257	1	0	0	0	0	1	copy fasta	KIAA0930	chr22	45187244	45245894
KIAA0930_chr22_45187244_45245894	0/0	t0180	5247	1	0	0	0	0	1	copy fasta	KIAA0930	chr22	45187244	45245894
KIAA0930_chr22_45187244_45245894	0/0	t0181	5245	1	0	0	1	0	0	copy fasta	KIAA0930	chr22	45187244	45245894
KIAA0930_chr22_45187244_45245894	0/0	t0182	5238	1	0	0	1	0	0	copy fasta	KIAA0930	chr22	45187244	45245894
KIAA0930_chr22_45187244_45245894	0/0	t0183	5237	1	0	0	1	0	0	copy fasta	KIAA0930	chr22	45187244	45245894
KIAA0930_chr22_45187244_45245894	0/0	t0184	5245	1	0	0	1	0	0	copy fasta	KIAA0930	chr22	45187244	45245894
KIAA0930_chr22_45187244_45245894	0/0	t0185	5235	1	0	0	1	0	0	copy fasta	KIAA0930	chr22	45187244	45245894
KIAA0930_chr22_45187244_45245894	0/0	t0186	5237	1	0	0	1	0	0	copy fasta	KIAA0930	chr22	45187244	45245894
KIAA0930_chr22_45187244_45245894	0/0	t0187	5257	1	1	0	0	0	0	copy fasta	KIAA0930	chr22	45187244	45245894
KIAA0930_chr22_45187244_45245894	0/0	t0188	5258	1	0	0	1	0	0	copy fasta	KIAA0930	chr22	45187244	45245894
KIAA1143_chr3_44743744_44766619	0/1	t0001	4612	191	44	44	74	11	17	copy fasta	KIAA1143	chr3	44743744	44766619
KIAA1143_chr3_44743744_44766619	0/0	t0002	4615	73	21	19	19	4	10	copy fasta	KIAA1143	chr3	44743744	44766619
KIAA1143_chr3_44743744_44766619	1/0	t0003	4615	12	8	3	0	0	0	copy fasta	KIAA1143	chr3	44743744	44766619
KIAA1143_chr3_44743744_44766619	0/0	t0004	4612	9	8	1	0	0	0	copy fasta	KIAA1143	chr3	44743744	44766619
KIAA1143_chr3_44743744_44766619	0/0	t0005	4612	6	0	0	6	0	0	copy fasta	KIAA1143	chr3	44743744	44766619
KIAA1143_chr3_44743744_44766619	0/0	t0006	4612	5	5	0	0	0	0	copy fasta	KIAA1143	chr3	44743744	44766619
KIAA1143_chr3_44743744_44766619	0/0	t0007	4612	4	0	0	4	0	0	copy fasta	KIAA1143	chr3	44743744	44766619
KIAA1143_chr3_44743744_44766619	0/0	t0008	4612	3	0	3	0	0	0	copy fasta	KIAA1143	chr3	44743744	44766619
KIAA1143_chr3_44743744_44766619	0/0	t0009	4612	3	2	0	0	1	0	copy fasta	KIAA1143	chr3	44743744	44766619
KIAA1143_chr3_44743744_44766619	0/0	t0010	4615	2	0	0	2	0	0	copy fasta	KIAA1143	chr3	44743744	44766619
KIAA1143_chr3_44743744_44766619	0/0	t0011	4612	2	0	2	0	0	0	copy fasta	KIAA1143	chr3	44743744	44766619
KIAA1143_chr3_44743744_44766619	0/0	t0012	4612	2	0	0	0	0	2	copy fasta	KIAA1143	chr3	44743744	44766619
KIAA1143_chr3_44743744_44766619	0/0	t0013	4612	2	0	0	0	0	2	copy fasta	KIAA1143	chr3	44743744	44766619
KIAA1143_chr3_44743744_44766619	0/0	t0014	4612	2	2	0	0	0	0	copy fasta	KIAA1143	chr3	44743744	44766619
KIAA1143_chr3_44743744_44766619	0/0	t0015	4615	1	1	0	0	0	0	copy fasta	KIAA1143	chr3	44743744	44766619
KIAA1143_chr3_44743744_44766619	0/0	t0016	4615	1	0	0	0	0	1	copy fasta	KIAA1143	chr3	44743744	44766619
KIAA1143_chr3_44743744_44766619	0/0	t0017	4615	1	0	1	0	0	0	copy fasta	KIAA1143	chr3	44743744	44766619
KIAA1143_chr3_44743744_44766619	0/0	t0018	4615	1	0	1	0	0	0	copy fasta	KIAA1143	chr3	44743744	44766619
KIAA1143_chr3_44743744_44766619	0/0	t0019	4612	1	0	0	0	0	1	copy fasta	KIAA1143	chr3	44743744	44766619
KIAA1143_chr3_44743744_44766619	0/0	t0020	4612	1	1	0	0	0	0	copy fasta	KIAA1143	chr3	44743744	44766619
KIAA1143_chr3_44743744_44766619	0/0	t0021	4612	1	1	0	0	0	0	copy fasta	KIAA1143	chr3	44743744	44766619
KIAA1143_chr3_44743744_44766619	0/0	t0022	4612	1	0	1	0	0	0	copy fasta	KIAA1143	chr3	44743744	44766619
KIAA1143_chr3_44743744_44766619	0/0	t0023	4612	1	0	1	0	0	0	copy fasta	KIAA1143	chr3	44743744	44766619
KIAA1143_chr3_44743744_44766619	0/0	t0024	4612	1	1	0	0	0	0	copy fasta	KIAA1143	chr3	44743744	44766619
KIAA1143_chr3_44743744_44766619	0/0	t0025	4612	1	0	0	1	0	0	copy fasta	KIAA1143	chr3	44743744	44766619
KIAA1143_chr3_44743744_44766619	0/0	t0026	4612	1	0	0	0	0	1	copy fasta	KIAA1143	chr3	44743744	44766619
KIAA1191_chr5_176341062_176366764	0/1	t0001	1869	264	66	50	112	7	28	copy fasta	KIAA1191	chr5	176341062	176366764
KIAA1191_chr5_176341062_176366764	1/0	t0002	1869	124	26	20	62	3	12	copy fasta	KIAA1191	chr5	176341062	176366764
KIAA1191_chr5_176341062_176366764	0/0	t0003	1869	3	0	0	2	0	1	copy fasta	KIAA1191	chr5	176341062	176366764
KIAA1191_chr5_176341062_176366764	0/0	t0004	1869	3	0	0	0	0	3	copy fasta	KIAA1191	chr5	176341062	176366764
KIAA1191_chr5_176341062_176366764	0/0	t0005	1869	2	2	0	0	0	0	copy fasta	KIAA1191	chr5	176341062	176366764
KIAA1191_chr5_176341062_176366764	0/0	t0006	1869	2	1	1	0	0	0	copy fasta	KIAA1191	chr5	176341062	176366764
KIAA1191_chr5_176341062_176366764	0/0	t0007	1869	1	0	0	1	0	0	copy fasta	KIAA1191	chr5	176341062	176366764
KIAA1191_chr5_176341062_176366764	0/0	t0008	1869	1	1	0	0	0	0	copy fasta	KIAA1191	chr5	176341062	176366764
KIAA1191_chr5_176341062_176366764	0/0	t0009	1869	1	1	0	0	0	0	copy fasta	KIAA1191	chr5	176341062	176366764
KIAA1191_chr5_176341062_176366764	0/0	t0010	1869	1	1	0	0	0	0	copy fasta	KIAA1191	chr5	176341062	176366764