JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KIAA1217_chr10_24204138_24552843	0/0	t0012	1577	1	0	1	0	0	0	copy fasta	KIAA1217	chr10	24204138	24552843
KIAA1217_chr10_24204138_24552843	0/0	t0013	1577	1	0	0	1	0	0	copy fasta	KIAA1217	chr10	24204138	24552843
KIAA1217_chr10_24204138_24552843	0/0	t0014	1577	1	1	0	0	0	0	copy fasta	KIAA1217	chr10	24204138	24552843
KIAA1217_chr10_24204138_24552843	0/0	t0015	1575	1	1	0	0	0	0	copy fasta	KIAA1217	chr10	24204138	24552843
KIAA1217_chr10_24204138_24552843	0/0	t0016	1576	1	1	0	0	0	0	copy fasta	KIAA1217	chr10	24204138	24552843
KIAA1328_chr18_36824127_37230334	0/0	t0001	3120	42	1	8	24	4	5	copy fasta	KIAA1328	chr18	36824127	37230334
KIAA1328_chr18_36824127_37230334	1/0	t0002	3120	41	9	13	13	4	1	copy fasta	KIAA1328	chr18	36824127	37230334
KIAA1328_chr18_36824127_37230334	0/0	t0003	3120	39	9	6	15	2	7	copy fasta	KIAA1328	chr18	36824127	37230334
KIAA1328_chr18_36824127_37230334	0/1	t0004	3118	22	3	12	0	1	5	copy fasta	KIAA1328	chr18	36824127	37230334
KIAA1328_chr18_36824127_37230334	0/0	t0005	3120	15	14	1	0	0	0	copy fasta	KIAA1328	chr18	36824127	37230334
KIAA1328_chr18_36824127_37230334	0/0	t0006	3120	7	7	0	0	0	0	copy fasta	KIAA1328	chr18	36824127	37230334
KIAA1328_chr18_36824127_37230334	0/0	t0007	3120	7	6	1	0	0	0	copy fasta	KIAA1328	chr18	36824127	37230334
KIAA1328_chr18_36824127_37230334	0/0	t0008	3120	6	6	0	0	0	0	copy fasta	KIAA1328	chr18	36824127	37230334
KIAA1328_chr18_36824127_37230334	0/0	t0009	3120	5	5	0	0	0	0	copy fasta	KIAA1328	chr18	36824127	37230334
KIAA1328_chr18_36824127_37230334	0/0	t0010	3120	3	3	0	0	0	0	copy fasta	KIAA1328	chr18	36824127	37230334
KIAA1328_chr18_36824127_37230334	0/0	t0011	3120	3	2	1	0	0	0	copy fasta	KIAA1328	chr18	36824127	37230334
KIAA1328_chr18_36824127_37230334	0/0	t0012	3120	2	2	0	0	0	0	copy fasta	KIAA1328	chr18	36824127	37230334
KIAA1328_chr18_36824127_37230334	0/0	t0013	3120	1	1	0	0	0	0	copy fasta	KIAA1328	chr18	36824127	37230334
KIAA1328_chr18_36824127_37230334	0/0	t0014	3120	1	1	0	0	0	0	copy fasta	KIAA1328	chr18	36824127	37230334
KIAA1328_chr18_36824127_37230334	0/0	t0015	3120	1	1	0	0	0	0	copy fasta	KIAA1328	chr18	36824127	37230334
KIAA1328_chr18_36824127_37230334	0/0	t0016	3120	1	0	1	0	0	0	copy fasta	KIAA1328	chr18	36824127	37230334
KIAA1328_chr18_36824127_37230334	0/0	t0017	3120	1	1	0	0	0	0	copy fasta	KIAA1328	chr18	36824127	37230334
KIAA1328_chr18_36824127_37230334	0/0	t0018	3120	1	0	1	0	0	0	copy fasta	KIAA1328	chr18	36824127	37230334
KIAA1328_chr18_36824127_37230334	0/0	t0019	3118	1	0	0	0	1	0	copy fasta	KIAA1328	chr18	36824127	37230334
KIAA1328_chr18_36824127_37230334	0/0	t0020	3120	1	1	0	0	0	0	copy fasta	KIAA1328	chr18	36824127	37230334
KIAA1522_chr1_32736830_32779970	1/1	t0001	2209	261	65	54	93	11	36	copy fasta	KIAA1522	chr1	32736830	32779970
KIAA1522_chr1_32736830_32779970	0/0	t0002	2209	54	0	8	35	4	7	copy fasta	KIAA1522	chr1	32736830	32779970
KIAA1522_chr1_32736830_32779970	0/0	t0003	2209	12	12	0	0	0	0	copy fasta	KIAA1522	chr1	32736830	32779970
KIAA1522_chr1_32736830_32779970	0/0	t0004	2209	3	3	0	0	0	0	copy fasta	KIAA1522	chr1	32736830	32779970
KIAA1522_chr1_32736830_32779970	0/0	t0005	2209	2	2	0	0	0	0	copy fasta	KIAA1522	chr1	32736830	32779970
KIAA1522_chr1_32736830_32779970	0/0	t0006	2209	2	2	0	0	0	0	copy fasta	KIAA1522	chr1	32736830	32779970
KIAA1522_chr1_32736830_32779970	0/0	t0007	2209	2	2	0	0	0	0	copy fasta	KIAA1522	chr1	32736830	32779970
KIAA1522_chr1_32736830_32779970	0/0	t0008	2209	1	0	0	0	1	0	copy fasta	KIAA1522	chr1	32736830	32779970
KIAA1522_chr1_32736830_32779970	0/0	t0009	2209	1	0	0	1	0	0	copy fasta	KIAA1522	chr1	32736830	32779970
KIAA1522_chr1_32736830_32779970	0/0	t0010	2209	1	0	1	0	0	0	copy fasta	KIAA1522	chr1	32736830	32779970
KIAA1522_chr1_32736830_32779970	0/0	t0011	2209	1	1	0	0	0	0	copy fasta	KIAA1522	chr1	32736830	32779970
KIAA1522_chr1_32736830_32779970	0/0	t0012	2209	1	1	0	0	0	0	copy fasta	KIAA1522	chr1	32736830	32779970
KIAA1522_chr1_32736830_32779970	0/0	t0013	2209	1	0	0	1	0	0	copy fasta	KIAA1522	chr1	32736830	32779970
KIAA1522_chr1_32736830_32779970	0/0	t0014	2209	1	0	1	0	0	0	copy fasta	KIAA1522	chr1	32736830	32779970
KIAA1522_chr1_32736830_32779970	0/0	t0015	2209	1	1	0	0	0	0	copy fasta	KIAA1522	chr1	32736830	32779970
KIAA1522_chr1_32736830_32779970	0/0	t0016	2209	1	0	0	1	0	0	copy fasta	KIAA1522	chr1	32736830	32779970
KIAA1522_chr1_32736830_32779970	0/0	t0017	2209	1	0	0	0	0	1	copy fasta	KIAA1522	chr1	32736830	32779970
KIAA1522_chr1_32736830_32779970	0/0	t0018	2209	1	1	0	0	0	0	copy fasta	KIAA1522	chr1	32736830	32779970
KIAA1522_chr1_32736830_32779970	0/0	t0019	2209	1	0	0	1	0	0	copy fasta	KIAA1522	chr1	32736830	32779970
KIAA1549L_chr11_33371108_33679102	0/0	t0001	6493	39	10	11	13	0	5	copy fasta	KIAA1549L	chr11	33371108	33679102
KIAA1549L_chr11_33371108_33679102	1/0	t0002	6493	38	5	9	18	2	3	copy fasta	KIAA1549L	chr11	33371108	33679102
KIAA1549L_chr11_33371108_33679102	0/0	t0003	6493	7	7	0	0	0	0	copy fasta	KIAA1549L	chr11	33371108	33679102
KIAA1549L_chr11_33371108_33679102	0/0	t0004	6491	6	1	0	3	0	2	copy fasta	KIAA1549L	chr11	33371108	33679102
KIAA1549L_chr11_33371108_33679102	0/0	t0005	6510	6	0	1	4	0	1	copy fasta	KIAA1549L	chr11	33371108	33679102
KIAA1549L_chr11_33371108_33679102	0/0	t0006	6508	6	5	0	1	0	0	copy fasta	KIAA1549L	chr11	33371108	33679102