JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KIAA1549L_chr11_33371108_33679102	0/0	t0007	6508	5	1	1	2	0	1	copy fasta	KIAA1549L	chr11	33371108	33679102
KIAA1549L_chr11_33371108_33679102	0/0	t0008	6495	5	0	0	4	1	0	copy fasta	KIAA1549L	chr11	33371108	33679102
KIAA1549L_chr11_33371108_33679102	0/0	t0009	6497	5	3	2	0	0	0	copy fasta	KIAA1549L	chr11	33371108	33679102
KIAA1549L_chr11_33371108_33679102	0/0	t0010	6493	5	3	0	0	2	0	copy fasta	KIAA1549L	chr11	33371108	33679102
KIAA1549L_chr11_33371108_33679102	0/0	t0011	6491	5	4	0	0	0	1	copy fasta	KIAA1549L	chr11	33371108	33679102
KIAA1549L_chr11_33371108_33679102	0/0	t0012	6510	4	0	1	3	0	0	copy fasta	KIAA1549L	chr11	33371108	33679102
KIAA1549L_chr11_33371108_33679102	0/0	t0013	6493	4	0	0	4	0	0	copy fasta	KIAA1549L	chr11	33371108	33679102
KIAA1549L_chr11_33371108_33679102	0/0	t0014	6495	4	0	1	3	0	0	copy fasta	KIAA1549L	chr11	33371108	33679102
KIAA1549L_chr11_33371108_33679102	0/0	t0015	6504	3	0	0	2	0	1	copy fasta	KIAA1549L	chr11	33371108	33679102
KIAA1549L_chr11_33371108_33679102	0/0	t0016	6491	3	3	0	0	0	0	copy fasta	KIAA1549L	chr11	33371108	33679102
KIAA1549L_chr11_33371108_33679102	0/0	t0017	6514	3	0	2	1	0	0	copy fasta	KIAA1549L	chr11	33371108	33679102
KIAA1549L_chr11_33371108_33679102	0/0	t0018	6504	3	0	0	1	0	2	copy fasta	KIAA1549L	chr11	33371108	33679102
KIAA1549L_chr11_33371108_33679102	0/0	t0019	6493	3	3	0	0	0	0	copy fasta	KIAA1549L	chr11	33371108	33679102
KIAA1549L_chr11_33371108_33679102	0/0	t0020	6493	3	1	1	0	0	1	copy fasta	KIAA1549L	chr11	33371108	33679102
KIAA1549L_chr11_33371108_33679102	0/0	t0021	6491	2	0	1	0	1	0	copy fasta	KIAA1549L	chr11	33371108	33679102
KIAA1549L_chr11_33371108_33679102	0/0	t0022	6520	2	2	0	0	0	0	copy fasta	KIAA1549L	chr11	33371108	33679102
KIAA1549L_chr11_33371108_33679102	0/0	t0023	6514	2	0	1	0	0	1	copy fasta	KIAA1549L	chr11	33371108	33679102
KIAA1549L_chr11_33371108_33679102	0/0	t0024	6497	2	0	0	0	1	1	copy fasta	KIAA1549L	chr11	33371108	33679102
KIAA1549L_chr11_33371108_33679102	0/0	t0025	6493	2	0	1	0	0	1	copy fasta	KIAA1549L	chr11	33371108	33679102
KIAA1549L_chr11_33371108_33679102	0/0	t0026	6512	2	0	1	0	1	0	copy fasta	KIAA1549L	chr11	33371108	33679102
KIAA1549L_chr11_33371108_33679102	0/0	t0027	6502	2	0	0	2	0	0	copy fasta	KIAA1549L	chr11	33371108	33679102
KIAA1549L_chr11_33371108_33679102	0/0	t0028	6493	2	1	1	0	0	0	copy fasta	KIAA1549L	chr11	33371108	33679102
KIAA1549L_chr11_33371108_33679102	0/0	t0029	6498	2	2	0	0	0	0	copy fasta	KIAA1549L	chr11	33371108	33679102
KIAA1549L_chr11_33371108_33679102	0/0	t0030	6499	2	2	0	0	0	0	copy fasta	KIAA1549L	chr11	33371108	33679102
KIAA1549L_chr11_33371108_33679102	0/0	t0031	6503	2	2	0	0	0	0	copy fasta	KIAA1549L	chr11	33371108	33679102
KIAA1549L_chr11_33371108_33679102	0/0	t0032	6493	2	0	2	0	0	0	copy fasta	KIAA1549L	chr11	33371108	33679102
KIAA1549L_chr11_33371108_33679102	0/0	t0033	6493	1	1	0	0	0	0	copy fasta	KIAA1549L	chr11	33371108	33679102
KIAA1549L_chr11_33371108_33679102	0/0	t0034	6491	1	1	0	0	0	0	copy fasta	KIAA1549L	chr11	33371108	33679102
KIAA1549L_chr11_33371108_33679102	0/0	t0035	6481	1	1	0	0	0	0	copy fasta	KIAA1549L	chr11	33371108	33679102
KIAA1549L_chr11_33371108_33679102	0/0	t0036	6493	1	0	0	1	0	0	copy fasta	KIAA1549L	chr11	33371108	33679102
KIAA1549L_chr11_33371108_33679102	0/0	t0037	6490	1	1	0	0	0	0	copy fasta	KIAA1549L	chr11	33371108	33679102
KIAA1549L_chr11_33371108_33679102	0/0	t0038	6495	1	0	1	0	0	0	copy fasta	KIAA1549L	chr11	33371108	33679102
KIAA1549L_chr11_33371108_33679102	0/0	t0039	6493	1	0	0	1	0	0	copy fasta	KIAA1549L	chr11	33371108	33679102
KIAA1549L_chr11_33371108_33679102	0/0	t0040	6504	1	0	0	1	0	0	copy fasta	KIAA1549L	chr11	33371108	33679102
KIAA1549L_chr11_33371108_33679102	0/0	t0041	6512	1	0	1	0	0	0	copy fasta	KIAA1549L	chr11	33371108	33679102
KIAA1549L_chr11_33371108_33679102	0/0	t0042	6508	1	0	0	0	0	1	copy fasta	KIAA1549L	chr11	33371108	33679102
KIAA1549L_chr11_33371108_33679102	0/0	t0043	6506	1	0	0	0	0	1	copy fasta	KIAA1549L	chr11	33371108	33679102
KIAA1549L_chr11_33371108_33679102	0/0	t0044	6498	1	0	0	0	0	1	copy fasta	KIAA1549L	chr11	33371108	33679102
KIAA1549L_chr11_33371108_33679102	0/0	t0045	6499	1	0	1	0	0	0	copy fasta	KIAA1549L	chr11	33371108	33679102
KIAA1549L_chr11_33371108_33679102	0/0	t0046	6495	1	1	0	0	0	0	copy fasta	KIAA1549L	chr11	33371108	33679102
KIAA1549L_chr11_33371108_33679102	0/0	t0047	6493	1	1	0	0	0	0	copy fasta	KIAA1549L	chr11	33371108	33679102
KIAA1549L_chr11_33371108_33679102	0/0	t0048	6493	1	1	0	0	0	0	copy fasta	KIAA1549L	chr11	33371108	33679102
KIAA1549L_chr11_33371108_33679102	0/0	t0049	6503	1	1	0	0	0	0	copy fasta	KIAA1549L	chr11	33371108	33679102
KIAA1549L_chr11_33371108_33679102	0/0	t0050	6493	1	1	0	0	0	0	copy fasta	KIAA1549L	chr11	33371108	33679102
KIAA1549L_chr11_33371108_33679102	0/0	t0051	6493	1	1	0	0	0	0	copy fasta	KIAA1549L	chr11	33371108	33679102
KIAA1549L_chr11_33371108_33679102	0/0	t0052	6498	1	1	0	0	0	0	copy fasta	KIAA1549L	chr11	33371108	33679102
KIAA1549L_chr11_33371108_33679102	0/0	t0053	6493	1	1	0	0	0	0	copy fasta	KIAA1549L	chr11	33371108	33679102
KIAA1549L_chr11_33371108_33679102	0/0	t0054	6493	1	0	0	0	0	1	copy fasta	KIAA1549L	chr11	33371108	33679102
KIAA1549L_chr11_33371108_33679102	0/0	t0055	6502	1	1	0	0	0	0	copy fasta	KIAA1549L	chr11	33371108	33679102
KIAA1549L_chr11_33371108_33679102	0/0	t0056	6516	1	1	0	0	0	0	copy fasta	KIAA1549L	chr11	33371108	33679102