JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KIAA1586_chr6_57041693_57060225	1/1	t0001	426	330	89	60	129	12	38	copy fasta	KIAA1586	chr6	57041693	57060225
KIAA1586_chr6_57041693_57060225	0/0	t0002	426	1	1	0	0	0	0	copy fasta	KIAA1586	chr6	57041693	57060225
KIAA1586_chr6_57041693_57060225	0/0	t0003	426	1	0	0	1	0	0	copy fasta	KIAA1586	chr6	57041693	57060225
KIAA1614_chr1_180907897_180956614	0/0	t0001	6373	46	4	2	35	4	1	copy fasta	KIAA1614	chr1	180907897	180956614
KIAA1614_chr1_180907897_180956614	0/0	t0002	6373	40	0	6	25	2	7	copy fasta	KIAA1614	chr1	180907897	180956614
KIAA1614_chr1_180907897_180956614	0/0	t0003	6373	32	2	2	18	0	10	copy fasta	KIAA1614	chr1	180907897	180956614
KIAA1614_chr1_180907897_180956614	0/0	t0004	6373	28	0	10	14	0	4	copy fasta	KIAA1614	chr1	180907897	180956614
KIAA1614_chr1_180907897_180956614	0/0	t0005	6380	23	7	0	16	0	0	copy fasta	KIAA1614	chr1	180907897	180956614
KIAA1614_chr1_180907897_180956614	0/0	t0006	6367	15	1	6	5	1	2	copy fasta	KIAA1614	chr1	180907897	180956614
KIAA1614_chr1_180907897_180956614	0/1	t0007	6380	12	0	1	9	0	1	copy fasta	KIAA1614	chr1	180907897	180956614
KIAA1614_chr1_180907897_180956614	0/0	t0008	6373	10	1	7	0	2	0	copy fasta	KIAA1614	chr1	180907897	180956614
KIAA1614_chr1_180907897_180956614	0/0	t0009	6373	8	0	4	0	2	2	copy fasta	KIAA1614	chr1	180907897	180956614
KIAA1614_chr1_180907897_180956614	0/0	t0010	6380	7	0	0	7	0	0	copy fasta	KIAA1614	chr1	180907897	180956614
KIAA1614_chr1_180907897_180956614	0/0	t0011	6367	7	1	0	3	1	2	copy fasta	KIAA1614	chr1	180907897	180956614
KIAA1614_chr1_180907897_180956614	0/0	t0012	6373	5	0	0	5	0	0	copy fasta	KIAA1614	chr1	180907897	180956614
KIAA1614_chr1_180907897_180956614	0/0	t0013	6373	5	1	2	0	0	2	copy fasta	KIAA1614	chr1	180907897	180956614
KIAA1614_chr1_180907897_180956614	0/0	t0014	6373	5	0	0	5	0	0	copy fasta	KIAA1614	chr1	180907897	180956614
KIAA1614_chr1_180907897_180956614	0/0	t0015	6373	5	0	0	5	0	0	copy fasta	KIAA1614	chr1	180907897	180956614
KIAA1614_chr1_180907897_180956614	0/0	t0016	6369	5	0	5	0	0	0	copy fasta	KIAA1614	chr1	180907897	180956614
KIAA1614_chr1_180907897_180956614	0/0	t0017	6364	5	0	5	0	0	0	copy fasta	KIAA1614	chr1	180907897	180956614
KIAA1614_chr1_180907897_180956614	0/0	t0018	6374	4	4	0	0	0	0	copy fasta	KIAA1614	chr1	180907897	180956614
KIAA1614_chr1_180907897_180956614	0/0	t0019	6373	4	4	0	0	0	0	copy fasta	KIAA1614	chr1	180907897	180956614
KIAA1614_chr1_180907897_180956614	0/0	t0020	6373	4	0	3	0	1	0	copy fasta	KIAA1614	chr1	180907897	180956614
KIAA1614_chr1_180907897_180956614	0/0	t0021	6373	4	3	1	0	0	0	copy fasta	KIAA1614	chr1	180907897	180956614
KIAA1614_chr1_180907897_180956614	0/0	t0022	6380	4	3	1	0	0	0	copy fasta	KIAA1614	chr1	180907897	180956614
KIAA1614_chr1_180907897_180956614	0/0	t0023	6374	3	3	0	0	0	0	copy fasta	KIAA1614	chr1	180907897	180956614
KIAA1614_chr1_180907897_180956614	0/0	t0024	6373	3	0	0	3	0	0	copy fasta	KIAA1614	chr1	180907897	180956614
KIAA1614_chr1_180907897_180956614	0/0	t0025	6373	3	0	0	1	1	1	copy fasta	KIAA1614	chr1	180907897	180956614
KIAA1614_chr1_180907897_180956614	0/0	t0026	6373	3	3	0	0	0	0	copy fasta	KIAA1614	chr1	180907897	180956614
KIAA1614_chr1_180907897_180956614	0/0	t0027	6367	3	0	0	3	0	0	copy fasta	KIAA1614	chr1	180907897	180956614
KIAA1614_chr1_180907897_180956614	0/0	t0028	6373	3	3	0	0	0	0	copy fasta	KIAA1614	chr1	180907897	180956614
KIAA1614_chr1_180907897_180956614	0/0	t0029	6368	3	0	0	3	0	0	copy fasta	KIAA1614	chr1	180907897	180956614
KIAA1614_chr1_180907897_180956614	0/0	t0030	6374	2	2	0	0	0	0	copy fasta	KIAA1614	chr1	180907897	180956614
KIAA1614_chr1_180907897_180956614	0/0	t0031	6373	2	2	0	0	0	0	copy fasta	KIAA1614	chr1	180907897	180956614
KIAA1614_chr1_180907897_180956614	0/0	t0032	6373	2	0	0	2	0	0	copy fasta	KIAA1614	chr1	180907897	180956614
KIAA1614_chr1_180907897_180956614	0/0	t0033	6373	2	0	0	2	0	0	copy fasta	KIAA1614	chr1	180907897	180956614
KIAA1614_chr1_180907897_180956614	0/0	t0034	6373	2	0	0	2	0	0	copy fasta	KIAA1614	chr1	180907897	180956614
KIAA1614_chr1_180907897_180956614	0/0	t0035	6373	2	2	0	0	0	0	copy fasta	KIAA1614	chr1	180907897	180956614
KIAA1614_chr1_180907897_180956614	0/0	t0036	6373	2	0	2	0	0	0	copy fasta	KIAA1614	chr1	180907897	180956614
KIAA1614_chr1_180907897_180956614	0/0	t0037	6373	2	0	0	2	0	0	copy fasta	KIAA1614	chr1	180907897	180956614
KIAA1614_chr1_180907897_180956614	0/0	t0038	6380	2	2	0	0	0	0	copy fasta	KIAA1614	chr1	180907897	180956614
KIAA1614_chr1_180907897_180956614	0/0	t0039	6373	2	0	0	2	0	0	copy fasta	KIAA1614	chr1	180907897	180956614
KIAA1614_chr1_180907897_180956614	0/0	t0040	6373	2	0	0	2	0	0	copy fasta	KIAA1614	chr1	180907897	180956614
KIAA1614_chr1_180907897_180956614	0/0	t0041	6373	2	0	0	2	0	0	copy fasta	KIAA1614	chr1	180907897	180956614
KIAA1614_chr1_180907897_180956614	0/0	t0042	6373	2	0	1	0	0	1	copy fasta	KIAA1614	chr1	180907897	180956614
KIAA1614_chr1_180907897_180956614	0/0	t0043	6373	2	2	0	0	0	0	copy fasta	KIAA1614	chr1	180907897	180956614
KIAA1614_chr1_180907897_180956614	0/0	t0044	6373	2	2	0	0	0	0	copy fasta	KIAA1614	chr1	180907897	180956614
KIAA1614_chr1_180907897_180956614	0/0	t0045	6373	2	2	0	0	0	0	copy fasta	KIAA1614	chr1	180907897	180956614
KIAA1614_chr1_180907897_180956614	0/0	t0046	6367	2	2	0	0	0	0	copy fasta	KIAA1614	chr1	180907897	180956614
KIAA1614_chr1_180907897_180956614	0/0	t0047	6373	2	0	0	2	0	0	copy fasta	KIAA1614	chr1	180907897	180956614