JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KIAA1671_chr22_24947716_25202448	0/0	t0012	5312	2	2	0	0	0	0	copy fasta	KIAA1671	chr22	24947716	25202448
KIAA1671_chr22_24947716_25202448	0/0	t0013	5303	2	0	2	0	0	0	copy fasta	KIAA1671	chr22	24947716	25202448
KIAA1671_chr22_24947716_25202448	0/0	t0014	5314	2	0	0	0	0	2	copy fasta	KIAA1671	chr22	24947716	25202448
KIAA1671_chr22_24947716_25202448	0/0	t0015	5312	2	1	0	0	0	1	copy fasta	KIAA1671	chr22	24947716	25202448
KIAA1671_chr22_24947716_25202448	0/0	t0016	5312	2	2	0	0	0	0	copy fasta	KIAA1671	chr22	24947716	25202448
KIAA1671_chr22_24947716_25202448	0/0	t0017	5312	2	0	2	0	0	0	copy fasta	KIAA1671	chr22	24947716	25202448
KIAA1671_chr22_24947716_25202448	0/0	t0018	5312	2	2	0	0	0	0	copy fasta	KIAA1671	chr22	24947716	25202448
KIAA1671_chr22_24947716_25202448	0/0	t0019	5312	1	1	0	0	0	0	copy fasta	KIAA1671	chr22	24947716	25202448
KIAA1671_chr22_24947716_25202448	0/0	t0020	5312	1	1	0	0	0	0	copy fasta	KIAA1671	chr22	24947716	25202448
KIAA1671_chr22_24947716_25202448	0/0	t0021	5304	1	1	0	0	0	0	copy fasta	KIAA1671	chr22	24947716	25202448
KIAA1671_chr22_24947716_25202448	0/0	t0022	5312	1	1	0	0	0	0	copy fasta	KIAA1671	chr22	24947716	25202448
KIAA1671_chr22_24947716_25202448	0/0	t0023	5314	1	1	0	0	0	0	copy fasta	KIAA1671	chr22	24947716	25202448
KIAA1671_chr22_24947716_25202448	0/0	t0024	5312	1	1	0	0	0	0	copy fasta	KIAA1671	chr22	24947716	25202448
KIAA1671_chr22_24947716_25202448	0/0	t0025	5304	1	1	0	0	0	0	copy fasta	KIAA1671	chr22	24947716	25202448
KIAA1671_chr22_24947716_25202448	0/0	t0026	5303	1	0	0	1	0	0	copy fasta	KIAA1671	chr22	24947716	25202448
KIAA1671_chr22_24947716_25202448	0/0	t0027	5312	1	1	0	0	0	0	copy fasta	KIAA1671	chr22	24947716	25202448
KIAA1671_chr22_24947716_25202448	0/0	t0028	5303	1	0	0	0	0	1	copy fasta	KIAA1671	chr22	24947716	25202448
KIAA1671_chr22_24947716_25202448	0/0	t0029	5312	1	1	0	0	0	0	copy fasta	KIAA1671	chr22	24947716	25202448
KIAA1671_chr22_24947716_25202448	0/0	t0030	5312	1	1	0	0	0	0	copy fasta	KIAA1671	chr22	24947716	25202448
KIAA1671_chr22_24947716_25202448	0/0	t0031	5312	1	0	1	0	0	0	copy fasta	KIAA1671	chr22	24947716	25202448
KIAA1671_chr22_24947716_25202448	0/0	t0032	5312	1	1	0	0	0	0	copy fasta	KIAA1671	chr22	24947716	25202448
KIAA1671_chr22_24947716_25202448	0/0	t0033	5312	1	1	0	0	0	0	copy fasta	KIAA1671	chr22	24947716	25202448
KIAA1671_chr22_24947716_25202448	0/0	t0034	5313	1	0	0	0	0	1	copy fasta	KIAA1671	chr22	24947716	25202448
KIAA1671_chr22_24947716_25202448	0/0	t0035	5313	1	0	0	0	0	1	copy fasta	KIAA1671	chr22	24947716	25202448
KIAA1671_chr22_24947716_25202448	0/0	t0036	5312	1	1	0	0	0	0	copy fasta	KIAA1671	chr22	24947716	25202448
KIAA1671_chr22_24947716_25202448	0/0	t0037	5312	1	0	0	0	0	1	copy fasta	KIAA1671	chr22	24947716	25202448
KIAA1671_chr22_24947716_25202448	0/0	t0038	5313	1	0	0	1	0	0	copy fasta	KIAA1671	chr22	24947716	25202448
KIAA1671_chr22_24947716_25202448	0/0	t0039	5303	1	0	0	1	0	0	copy fasta	KIAA1671	chr22	24947716	25202448
KIAA1671_chr22_24947716_25202448	0/0	t0040	5312	1	0	0	1	0	0	copy fasta	KIAA1671	chr22	24947716	25202448
KIAA1671_chr22_24947716_25202448	0/0	t0041	5312	1	1	0	0	0	0	copy fasta	KIAA1671	chr22	24947716	25202448
KIAA1671_chr22_24947716_25202448	0/0	t0042	5312	1	1	0	0	0	0	copy fasta	KIAA1671	chr22	24947716	25202448
KIAA1755_chr20_38205503_38265735	1/1	t0001	2775	122	37	11	56	2	14	copy fasta	KIAA1755	chr20	38205503	38265735
KIAA1755_chr20_38205503_38265735	0/0	t0002	2776	72	2	8	54	1	7	copy fasta	KIAA1755	chr20	38205503	38265735
KIAA1755_chr20_38205503_38265735	0/0	t0003	2775	71	22	19	21	0	9	copy fasta	KIAA1755	chr20	38205503	38265735
KIAA1755_chr20_38205503_38265735	0/0	t0004	2775	53	7	16	16	7	7	copy fasta	KIAA1755	chr20	38205503	38265735
KIAA1755_chr20_38205503_38265735	0/0	t0005	2775	15	5	3	4	0	3	copy fasta	KIAA1755	chr20	38205503	38265735
KIAA1755_chr20_38205503_38265735	0/0	t0006	2776	5	0	0	5	0	0	copy fasta	KIAA1755	chr20	38205503	38265735
KIAA1755_chr20_38205503_38265735	0/0	t0007	2775	3	3	0	0	0	0	copy fasta	KIAA1755	chr20	38205503	38265735
KIAA1755_chr20_38205503_38265735	0/0	t0008	2775	2	0	0	2	0	0	copy fasta	KIAA1755	chr20	38205503	38265735
KIAA1755_chr20_38205503_38265735	0/0	t0009	2776	2	0	0	0	0	2	copy fasta	KIAA1755	chr20	38205503	38265735
KIAA1755_chr20_38205503_38265735	0/0	t0010	2775	1	1	0	0	0	0	copy fasta	KIAA1755	chr20	38205503	38265735
KIAA1755_chr20_38205503_38265735	0/0	t0011	2775	1	0	0	1	0	0	copy fasta	KIAA1755	chr20	38205503	38265735
KIAA1755_chr20_38205503_38265735	0/0	t0012	2775	1	1	0	0	0	0	copy fasta	KIAA1755	chr20	38205503	38265735
KIAA1755_chr20_38205503_38265735	0/0	t0013	2775	1	0	1	0	0	0	copy fasta	KIAA1755	chr20	38205503	38265735
KIAA1755_chr20_38205503_38265735	0/0	t0014	2776	1	1	0	0	0	0	copy fasta	KIAA1755	chr20	38205503	38265735
KIAA1755_chr20_38205503_38265735	0/0	t0015	2775	1	1	0	0	0	0	copy fasta	KIAA1755	chr20	38205503	38265735
KIAA1755_chr20_38205503_38265735	0/0	t0016	2776	1	0	0	1	0	0	copy fasta	KIAA1755	chr20	38205503	38265735
KIAA1755_chr20_38205503_38265735	0/0	t0017	2775	1	1	0	0	0	0	copy fasta	KIAA1755	chr20	38205503	38265735
KIAA1755_chr20_38205503_38265735	0/0	t0018	2776	1	1	0	0	0	0	copy fasta	KIAA1755	chr20	38205503	38265735
KIAA1755_chr20_38205503_38265735	0/0	t0019	2775	1	1	0	0	0	0	copy fasta	KIAA1755	chr20	38205503	38265735