JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KIAA1755_chr20_38205503_38265735	0/0	t0020	2775	1	1	0	0	0	0	copy fasta	KIAA1755	chr20	38205503	38265735
KIAA1755_chr20_38205503_38265735	0/0	t0021	2775	1	1	0	0	0	0	copy fasta	KIAA1755	chr20	38205503	38265735
KIAA1755_chr20_38205503_38265735	0/0	t0022	2775	1	1	0	0	0	0	copy fasta	KIAA1755	chr20	38205503	38265735
KIAA1958_chr9_112481827_112674397	0/0	t0001	9645	72	13	22	30	1	6	copy fasta	KIAA1958	chr9	112481827	112674397
KIAA1958_chr9_112481827_112674397	0/0	t0002	9702	61	13	11	36	0	1	copy fasta	KIAA1958	chr9	112481827	112674397
KIAA1958_chr9_112481827_112674397	0/0	t0003	9645	38	0	1	30	0	7	copy fasta	KIAA1958	chr9	112481827	112674397
KIAA1958_chr9_112481827_112674397	0/0	t0004	9700	9	0	0	8	0	1	copy fasta	KIAA1958	chr9	112481827	112674397
KIAA1958_chr9_112481827_112674397	0/0	t0005	9645	6	0	0	0	3	3	copy fasta	KIAA1958	chr9	112481827	112674397
KIAA1958_chr9_112481827_112674397	1/0	t0006	9645	6	0	1	3	1	0	copy fasta	KIAA1958	chr9	112481827	112674397
KIAA1958_chr9_112481827_112674397	0/0	t0007	9694	6	0	0	6	0	0	copy fasta	KIAA1958	chr9	112481827	112674397
KIAA1958_chr9_112481827_112674397	0/0	t0008	9645	5	0	4	0	1	0	copy fasta	KIAA1958	chr9	112481827	112674397
KIAA1958_chr9_112481827_112674397	0/0	t0009	9693	5	0	0	2	0	3	copy fasta	KIAA1958	chr9	112481827	112674397
KIAA1958_chr9_112481827_112674397	0/0	t0010	9694	5	0	1	1	3	0	copy fasta	KIAA1958	chr9	112481827	112674397
KIAA1958_chr9_112481827_112674397	0/0	t0011	9702	5	0	0	5	0	0	copy fasta	KIAA1958	chr9	112481827	112674397
KIAA1958_chr9_112481827_112674397	0/0	t0012	9645	4	0	0	4	0	0	copy fasta	KIAA1958	chr9	112481827	112674397
KIAA1958_chr9_112481827_112674397	0/0	t0013	9645	3	2	1	0	0	0	copy fasta	KIAA1958	chr9	112481827	112674397
KIAA1958_chr9_112481827_112674397	0/0	t0014	9703	3	3	0	0	0	0	copy fasta	KIAA1958	chr9	112481827	112674397
KIAA1958_chr9_112481827_112674397	0/0	t0015	9702	3	3	0	0	0	0	copy fasta	KIAA1958	chr9	112481827	112674397
KIAA1958_chr9_112481827_112674397	0/0	t0016	9689	3	3	0	0	0	0	copy fasta	KIAA1958	chr9	112481827	112674397
KIAA1958_chr9_112481827_112674397	0/0	t0017	9700	3	3	0	0	0	0	copy fasta	KIAA1958	chr9	112481827	112674397
KIAA1958_chr9_112481827_112674397	0/0	t0018	9645	3	0	0	2	0	1	copy fasta	KIAA1958	chr9	112481827	112674397
KIAA1958_chr9_112481827_112674397	0/0	t0019	9646	2	0	2	0	0	0	copy fasta	KIAA1958	chr9	112481827	112674397
KIAA1958_chr9_112481827_112674397	0/0	t0020	9645	2	0	2	0	0	0	copy fasta	KIAA1958	chr9	112481827	112674397
KIAA1958_chr9_112481827_112674397	0/0	t0021	9645	2	0	0	2	0	0	copy fasta	KIAA1958	chr9	112481827	112674397
KIAA1958_chr9_112481827_112674397	0/0	t0022	9703	2	2	0	0	0	0	copy fasta	KIAA1958	chr9	112481827	112674397
KIAA1958_chr9_112481827_112674397	0/0	t0023	9700	2	2	0	0	0	0	copy fasta	KIAA1958	chr9	112481827	112674397
KIAA1958_chr9_112481827_112674397	0/0	t0024	9704	2	0	0	2	0	0	copy fasta	KIAA1958	chr9	112481827	112674397
KIAA1958_chr9_112481827_112674397	0/0	t0025	9702	2	2	0	0	0	0	copy fasta	KIAA1958	chr9	112481827	112674397
KIAA1958_chr9_112481827_112674397	0/0	t0026	9701	2	2	0	0	0	0	copy fasta	KIAA1958	chr9	112481827	112674397
KIAA1958_chr9_112481827_112674397	0/0	t0027	9699	2	2	0	0	0	0	copy fasta	KIAA1958	chr9	112481827	112674397
KIAA1958_chr9_112481827_112674397	0/0	t0028	9700	2	0	0	2	0	0	copy fasta	KIAA1958	chr9	112481827	112674397
KIAA1958_chr9_112481827_112674397	0/0	t0029	9706	1	0	1	0	0	0	copy fasta	KIAA1958	chr9	112481827	112674397
KIAA1958_chr9_112481827_112674397	0/0	t0030	9650	1	0	0	1	0	0	copy fasta	KIAA1958	chr9	112481827	112674397
KIAA1958_chr9_112481827_112674397	0/0	t0031	9646	1	0	1	0	0	0	copy fasta	KIAA1958	chr9	112481827	112674397
KIAA1958_chr9_112481827_112674397	0/0	t0032	9645	1	0	0	0	0	1	copy fasta	KIAA1958	chr9	112481827	112674397
KIAA1958_chr9_112481827_112674397	0/0	t0033	9645	1	1	0	0	0	0	copy fasta	KIAA1958	chr9	112481827	112674397
KIAA1958_chr9_112481827_112674397	0/0	t0034	9645	1	0	1	0	0	0	copy fasta	KIAA1958	chr9	112481827	112674397
KIAA1958_chr9_112481827_112674397	0/0	t0035	9645	1	1	0	0	0	0	copy fasta	KIAA1958	chr9	112481827	112674397
KIAA1958_chr9_112481827_112674397	0/0	t0036	9645	1	0	0	0	1	0	copy fasta	KIAA1958	chr9	112481827	112674397
KIAA1958_chr9_112481827_112674397	0/0	t0037	9645	1	0	0	0	0	1	copy fasta	KIAA1958	chr9	112481827	112674397
KIAA1958_chr9_112481827_112674397	0/0	t0038	9645	1	0	0	1	0	0	copy fasta	KIAA1958	chr9	112481827	112674397
KIAA1958_chr9_112481827_112674397	0/0	t0039	9645	1	0	0	1	0	0	copy fasta	KIAA1958	chr9	112481827	112674397
KIAA1958_chr9_112481827_112674397	0/0	t0040	9646	1	1	0	0	0	0	copy fasta	KIAA1958	chr9	112481827	112674397
KIAA1958_chr9_112481827_112674397	0/0	t0041	9645	1	1	0	0	0	0	copy fasta	KIAA1958	chr9	112481827	112674397
KIAA1958_chr9_112481827_112674397	0/0	t0042	9645	1	1	0	0	0	0	copy fasta	KIAA1958	chr9	112481827	112674397
KIAA1958_chr9_112481827_112674397	0/0	t0043	9646	1	0	1	0	0	0	copy fasta	KIAA1958	chr9	112481827	112674397
KIAA1958_chr9_112481827_112674397	0/0	t0044	9645	1	0	0	0	1	0	copy fasta	KIAA1958	chr9	112481827	112674397
KIAA1958_chr9_112481827_112674397	0/0	t0045	9645	1	0	1	0	0	0	copy fasta	KIAA1958	chr9	112481827	112674397
KIAA1958_chr9_112481827_112674397	0/0	t0046	9700	1	0	0	0	0	1	copy fasta	KIAA1958	chr9	112481827	112674397
KIAA1958_chr9_112481827_112674397	0/0	t0047	9700	1	0	0	0	0	1	copy fasta	KIAA1958	chr9	112481827	112674397