JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KIAA1958_chr9_112481827_112674397	0/0	t0048	9702	1	0	0	1	0	0	copy fasta	KIAA1958	chr9	112481827	112674397
KIAA1958_chr9_112481827_112674397	0/0	t0049	9700	1	0	0	1	0	0	copy fasta	KIAA1958	chr9	112481827	112674397
KIAA1958_chr9_112481827_112674397	0/0	t0050	9700	1	0	0	0	1	0	copy fasta	KIAA1958	chr9	112481827	112674397
KIAA1958_chr9_112481827_112674397	0/0	t0051	9704	1	1	0	0	0	0	copy fasta	KIAA1958	chr9	112481827	112674397
KIAA1958_chr9_112481827_112674397	0/0	t0052	9703	1	1	0	0	0	0	copy fasta	KIAA1958	chr9	112481827	112674397
KIAA1958_chr9_112481827_112674397	0/0	t0053	9703	1	1	0	0	0	0	copy fasta	KIAA1958	chr9	112481827	112674397
KIAA1958_chr9_112481827_112674397	0/0	t0054	9701	1	1	0	0	0	0	copy fasta	KIAA1958	chr9	112481827	112674397
KIAA1958_chr9_112481827_112674397	0/0	t0055	9701	1	1	0	0	0	0	copy fasta	KIAA1958	chr9	112481827	112674397
KIAA1958_chr9_112481827_112674397	0/0	t0056	9704	1	1	0	0	0	0	copy fasta	KIAA1958	chr9	112481827	112674397
KIAA1958_chr9_112481827_112674397	0/0	t0057	9702	1	0	0	0	0	1	copy fasta	KIAA1958	chr9	112481827	112674397
KIAA1958_chr9_112481827_112674397	0/0	t0058	9702	1	1	0	0	0	0	copy fasta	KIAA1958	chr9	112481827	112674397
KIAA1958_chr9_112481827_112674397	0/0	t0059	9702	1	0	0	1	0	0	copy fasta	KIAA1958	chr9	112481827	112674397
KIAA1958_chr9_112481827_112674397	0/0	t0060	9702	1	0	1	0	0	0	copy fasta	KIAA1958	chr9	112481827	112674397
KIAA1958_chr9_112481827_112674397	0/0	t0061	9702	1	0	0	1	0	0	copy fasta	KIAA1958	chr9	112481827	112674397
KIAA1958_chr9_112481827_112674397	0/0	t0062	9700	1	1	0	0	0	0	copy fasta	KIAA1958	chr9	112481827	112674397
KIAA1958_chr9_112481827_112674397	0/0	t0063	9703	1	1	0	0	0	0	copy fasta	KIAA1958	chr9	112481827	112674397
KIAA1958_chr9_112481827_112674397	0/0	t0064	9700	1	0	0	0	0	1	copy fasta	KIAA1958	chr9	112481827	112674397
KIAA1958_chr9_112481827_112674397	0/0	t0065	9694	1	0	1	0	0	0	copy fasta	KIAA1958	chr9	112481827	112674397
KIAA1958_chr9_112481827_112674397	0/1	t0066	9694	1	0	0	0	0	0	copy fasta	KIAA1958	chr9	112481827	112674397
KIAA1958_chr9_112481827_112674397	0/0	t0067	9694	1	0	1	0	0	0	copy fasta	KIAA1958	chr9	112481827	112674397
KIAA1958_chr9_112481827_112674397	0/0	t0068	9702	1	1	0	0	0	0	copy fasta	KIAA1958	chr9	112481827	112674397
KIAA1958_chr9_112481827_112674397	0/0	t0069	9694	1	0	0	1	0	0	copy fasta	KIAA1958	chr9	112481827	112674397
KIAA1958_chr9_112481827_112674397	0/0	t0070	9645	1	1	0	0	0	0	copy fasta	KIAA1958	chr9	112481827	112674397
KIAA1958_chr9_112481827_112674397	0/0	t0071	9703	1	1	0	0	0	0	copy fasta	KIAA1958	chr9	112481827	112674397
KIAA1958_chr9_112481827_112674397	0/0	t0072	9645	1	0	1	0	0	0	copy fasta	KIAA1958	chr9	112481827	112674397
KIAA1958_chr9_112481827_112674397	0/0	t0073	9702	1	0	0	1	0	0	copy fasta	KIAA1958	chr9	112481827	112674397
KIAA1958_chr9_112481827_112674397	0/0	t0074	9653	1	0	0	1	0	0	copy fasta	KIAA1958	chr9	112481827	112674397
KIAA1958_chr9_112481827_112674397	0/0	t0075	9694	1	0	0	1	0	0	copy fasta	KIAA1958	chr9	112481827	112674397
KIAA1958_chr9_112481827_112674397	0/0	t0076	9702	1	1	0	0	0	0	copy fasta	KIAA1958	chr9	112481827	112674397
KIAA2012_chr2_202068255_202210188	0/1	t0001	585	266	62	56	111	12	24	copy fasta	KIAA2012	chr2	202068255	202210188
KIAA2012_chr2_202068255_202210188	1/0	t0002	585	44	8	8	15	2	10	copy fasta	KIAA2012	chr2	202068255	202210188
KIAA2012_chr2_202068255_202210188	0/0	t0003	585	1	1	0	0	0	0	copy fasta	KIAA2012	chr2	202068255	202210188
KIAA2012_chr2_202068255_202210188	0/0	t0004	585	1	1	0	0	0	0	copy fasta	KIAA2012	chr2	202068255	202210188
KIAA2013_chr1_11914591_11931427	0/0	t0001	915	247	56	38	122	6	25	copy fasta	KIAA2013	chr1	11914591	11931427
KIAA2013_chr1_11914591_11931427	1/1	t0002	915	154	19	33	76	7	17	copy fasta	KIAA2013	chr1	11914591	11931427
KIAA2013_chr1_11914591_11931427	0/0	t0003	915	30	13	4	6	3	4	copy fasta	KIAA2013	chr1	11914591	11931427
KIAA2013_chr1_11914591_11931427	0/0	t0004	915	6	6	0	0	0	0	copy fasta	KIAA2013	chr1	11914591	11931427
KIAA2013_chr1_11914591_11931427	0/0	t0005	915	2	0	0	0	2	0	copy fasta	KIAA2013	chr1	11914591	11931427
KIAA2013_chr1_11914591_11931427	0/0	t0006	915	2	2	0	0	0	0	copy fasta	KIAA2013	chr1	11914591	11931427
KIAA2013_chr1_11914591_11931427	0/0	t0007	915	1	0	1	0	0	0	copy fasta	KIAA2013	chr1	11914591	11931427
KIAA2013_chr1_11914591_11931427	0/0	t0008	915	1	0	0	1	0	0	copy fasta	KIAA2013	chr1	11914591	11931427
KIAA2013_chr1_11914591_11931427	0/0	t0009	915	1	0	0	1	0	0	copy fasta	KIAA2013	chr1	11914591	11931427
KIAA2026_chr9_5914022_6013482	0/0	t0001	1366	93	17	34	36	2	4	copy fasta	KIAA2026	chr9	5914022	6013482
KIAA2026_chr9_5914022_6013482	0/0	t0002	1368	58	18	8	23	2	7	copy fasta	KIAA2026	chr9	5914022	6013482
KIAA2026_chr9_5914022_6013482	0/0	t0003	1364	41	12	6	13	2	8	copy fasta	KIAA2026	chr9	5914022	6013482
KIAA2026_chr9_5914022_6013482	0/0	t0004	1370	33	3	5	18	0	7	copy fasta	KIAA2026	chr9	5914022	6013482
KIAA2026_chr9_5914022_6013482	0/0	t0005	1372	26	1	3	17	1	4	copy fasta	KIAA2026	chr9	5914022	6013482
KIAA2026_chr9_5914022_6013482	0/0	t0006	1362	26	11	1	10	1	3	copy fasta	KIAA2026	chr9	5914022	6013482
KIAA2026_chr9_5914022_6013482	0/0	t0007	1374	23	3	2	16	1	1	copy fasta	KIAA2026	chr9	5914022	6013482
KIAA2026_chr9_5914022_6013482	0/0	t0008	1376	13	6	0	5	1	1	copy fasta	KIAA2026	chr9	5914022	6013482