JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KIAA2026_chr9_5914022_6013482	0/0	t0009	1360	10	2	3	4	0	1	copy fasta	KIAA2026	chr9	5914022	6013482
KIAA2026_chr9_5914022_6013482	1/0	t0010	1358	8	3	1	2	0	1	copy fasta	KIAA2026	chr9	5914022	6013482
KIAA2026_chr9_5914022_6013482	0/0	t0011	1378	5	1	1	3	0	0	copy fasta	KIAA2026	chr9	5914022	6013482
KIAA2026_chr9_5914022_6013482	0/0	t0012	1375	4	0	0	4	0	0	copy fasta	KIAA2026	chr9	5914022	6013482
KIAA2026_chr9_5914022_6013482	0/1	t0013	1356	3	1	0	1	0	0	copy fasta	KIAA2026	chr9	5914022	6013482
KIAA2026_chr9_5914022_6013482	0/0	t0014	1370	2	2	0	0	0	0	copy fasta	KIAA2026	chr9	5914022	6013482
KIAA2026_chr9_5914022_6013482	0/0	t0015	1366	2	0	0	2	0	0	copy fasta	KIAA2026	chr9	5914022	6013482
KIAA2026_chr9_5914022_6013482	0/0	t0016	1382	2	0	1	1	0	0	copy fasta	KIAA2026	chr9	5914022	6013482
KIAA2026_chr9_5914022_6013482	0/0	t0017	1380	2	0	0	2	0	0	copy fasta	KIAA2026	chr9	5914022	6013482
KIAA2026_chr9_5914022_6013482	0/0	t0018	1364	2	2	0	0	0	0	copy fasta	KIAA2026	chr9	5914022	6013482
KIAA2026_chr9_5914022_6013482	0/0	t0019	1372	1	1	0	0	0	0	copy fasta	KIAA2026	chr9	5914022	6013482
KIAA2026_chr9_5914022_6013482	0/0	t0020	1364	1	0	0	1	0	0	copy fasta	KIAA2026	chr9	5914022	6013482
KIAA2026_chr9_5914022_6013482	0/0	t0021	1366	1	0	0	1	0	0	copy fasta	KIAA2026	chr9	5914022	6013482
KIAA2026_chr9_5914022_6013482	0/0	t0022	1358	1	0	0	1	0	0	copy fasta	KIAA2026	chr9	5914022	6013482
KIAA2026_chr9_5914022_6013482	0/0	t0023	1368	1	0	0	1	0	0	copy fasta	KIAA2026	chr9	5914022	6013482
KIAA2026_chr9_5914022_6013482	0/0	t0024	1360	1	0	1	0	0	0	copy fasta	KIAA2026	chr9	5914022	6013482
KIAA2026_chr9_5914022_6013482	0/0	t0025	1371	1	0	0	1	0	0	copy fasta	KIAA2026	chr9	5914022	6013482
KIAA2026_chr9_5914022_6013482	0/0	t0026	1379	1	0	0	1	0	0	copy fasta	KIAA2026	chr9	5914022	6013482
KIAA2026_chr9_5914022_6013482	0/0	t0027	1386	1	0	0	1	0	0	copy fasta	KIAA2026	chr9	5914022	6013482
KIAA2026_chr9_5914022_6013482	0/0	t0028	1377	1	0	0	1	0	0	copy fasta	KIAA2026	chr9	5914022	6013482
KIAA2026_chr9_5914022_6013482	0/0	t0029	1376	1	0	0	1	0	0	copy fasta	KIAA2026	chr9	5914022	6013482
KIAA2026_chr9_5914022_6013482	0/0	t0030	1372	1	0	0	1	0	0	copy fasta	KIAA2026	chr9	5914022	6013482
KIAA2026_chr9_5914022_6013482	0/0	t0031	1373	1	0	0	1	0	0	copy fasta	KIAA2026	chr9	5914022	6013482
KIAA2026_chr9_5914022_6013482	0/0	t0032	1374	1	1	0	0	0	0	copy fasta	KIAA2026	chr9	5914022	6013482
KIAA2026_chr9_5914022_6013482	0/0	t0033	1374	1	0	0	1	0	0	copy fasta	KIAA2026	chr9	5914022	6013482
KIAA2026_chr9_5914022_6013482	0/0	t0034	1371	1	0	0	1	0	0	copy fasta	KIAA2026	chr9	5914022	6013482
KIAA2026_chr9_5914022_6013482	0/0	t0035	1366	1	0	1	0	0	0	copy fasta	KIAA2026	chr9	5914022	6013482
KIAA2026_chr9_5914022_6013482	0/0	t0036	1366	1	0	0	0	0	1	copy fasta	KIAA2026	chr9	5914022	6013482
KIAA2026_chr9_5914022_6013482	0/0	t0037	1372	1	0	0	1	0	0	copy fasta	KIAA2026	chr9	5914022	6013482
KIAA2026_chr9_5914022_6013482	0/0	t0038	1364	1	0	0	1	0	0	copy fasta	KIAA2026	chr9	5914022	6013482
KIAA2026_chr9_5914022_6013482	0/0	t0039	1366	1	0	1	0	0	0	copy fasta	KIAA2026	chr9	5914022	6013482
KICS2_chr12_64186080_64227296	0/0	t0001	2822	147	22	35	72	9	9	copy fasta	KICS2	chr12	64186080	64227296
KICS2_chr12_64186080_64227296	0/0	t0002	2823	118	14	17	61	8	18	copy fasta	KICS2	chr12	64186080	64227296
KICS2_chr12_64186080_64227296	1/0	t0003	2822	35	6	12	10	1	5	copy fasta	KICS2	chr12	64186080	64227296
KICS2_chr12_64186080_64227296	0/1	t0004	2824	26	2	6	11	0	6	copy fasta	KICS2	chr12	64186080	64227296
KICS2_chr12_64186080_64227296	0/0	t0005	2823	14	1	3	9	0	1	copy fasta	KICS2	chr12	64186080	64227296
KICS2_chr12_64186080_64227296	0/0	t0006	2818	12	12	0	0	0	0	copy fasta	KICS2	chr12	64186080	64227296
KICS2_chr12_64186080_64227296	0/0	t0007	2823	9	9	0	0	0	0	copy fasta	KICS2	chr12	64186080	64227296
KICS2_chr12_64186080_64227296	0/0	t0008	2822	6	6	0	0	0	0	copy fasta	KICS2	chr12	64186080	64227296
KICS2_chr12_64186080_64227296	0/0	t0009	2823	5	2	1	2	0	0	copy fasta	KICS2	chr12	64186080	64227296
KICS2_chr12_64186080_64227296	0/0	t0010	2821	4	0	0	3	0	1	copy fasta	KICS2	chr12	64186080	64227296
KICS2_chr12_64186080_64227296	0/0	t0011	2822	4	0	0	4	0	0	copy fasta	KICS2	chr12	64186080	64227296
KICS2_chr12_64186080_64227296	0/0	t0012	2822	3	2	0	1	0	0	copy fasta	KICS2	chr12	64186080	64227296
KICS2_chr12_64186080_64227296	0/0	t0013	2822	2	2	0	0	0	0	copy fasta	KICS2	chr12	64186080	64227296
KICS2_chr12_64186080_64227296	0/0	t0014	2824	2	2	0	0	0	0	copy fasta	KICS2	chr12	64186080	64227296
KICS2_chr12_64186080_64227296	0/0	t0015	2823	2	2	0	0	0	0	copy fasta	KICS2	chr12	64186080	64227296
KICS2_chr12_64186080_64227296	0/0	t0016	2822	1	0	0	0	0	1	copy fasta	KICS2	chr12	64186080	64227296
KICS2_chr12_64186080_64227296	0/0	t0017	2807	1	0	0	1	0	0	copy fasta	KICS2	chr12	64186080	64227296
KICS2_chr12_64186080_64227296	0/0	t0018	2819	1	1	0	0	0	0	copy fasta	KICS2	chr12	64186080	64227296
KICS2_chr12_64186080_64227296	0/0	t0019	2823	1	1	0	0	0	0	copy fasta	KICS2	chr12	64186080	64227296