JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KIF13B_chr8_29062278_29268070	0/1	t0001	3263	77	15	25	26	3	7	copy fasta	KIF13B	chr8	29062278	29268070
KIF13B_chr8_29062278_29268070	1/0	t0002	3263	66	13	8	35	0	9	copy fasta	KIF13B	chr8	29062278	29268070
KIF13B_chr8_29062278_29268070	0/0	t0003	3263	55	7	9	26	1	12	copy fasta	KIF13B	chr8	29062278	29268070
KIF13B_chr8_29062278_29268070	0/0	t0004	3263	9	9	0	0	0	0	copy fasta	KIF13B	chr8	29062278	29268070
KIF13B_chr8_29062278_29268070	0/0	t0005	3262	9	1	0	8	0	0	copy fasta	KIF13B	chr8	29062278	29268070
KIF13B_chr8_29062278_29268070	0/0	t0006	3263	8	7	1	0	0	0	copy fasta	KIF13B	chr8	29062278	29268070
KIF13B_chr8_29062278_29268070	0/0	t0007	3263	6	6	0	0	0	0	copy fasta	KIF13B	chr8	29062278	29268070
KIF13B_chr8_29062278_29268070	0/0	t0008	3263	6	3	2	0	1	0	copy fasta	KIF13B	chr8	29062278	29268070
KIF13B_chr8_29062278_29268070	0/0	t0009	3263	3	0	2	0	1	0	copy fasta	KIF13B	chr8	29062278	29268070
KIF13B_chr8_29062278_29268070	0/0	t0010	3263	3	1	1	0	0	1	copy fasta	KIF13B	chr8	29062278	29268070
KIF13B_chr8_29062278_29268070	0/0	t0011	3263	3	3	0	0	0	0	copy fasta	KIF13B	chr8	29062278	29268070
KIF13B_chr8_29062278_29268070	0/0	t0012	3263	2	0	0	2	0	0	copy fasta	KIF13B	chr8	29062278	29268070
KIF13B_chr8_29062278_29268070	0/0	t0013	3263	2	2	0	0	0	0	copy fasta	KIF13B	chr8	29062278	29268070
KIF13B_chr8_29062278_29268070	0/0	t0014	3263	2	0	0	2	0	0	copy fasta	KIF13B	chr8	29062278	29268070
KIF13B_chr8_29062278_29268070	0/0	t0015	3263	2	0	0	2	0	0	copy fasta	KIF13B	chr8	29062278	29268070
KIF13B_chr8_29062278_29268070	0/0	t0016	3263	2	1	1	0	0	0	copy fasta	KIF13B	chr8	29062278	29268070
KIF13B_chr8_29062278_29268070	0/0	t0017	3263	2	0	1	0	0	1	copy fasta	KIF13B	chr8	29062278	29268070
KIF13B_chr8_29062278_29268070	0/0	t0018	3263	2	1	1	0	0	0	copy fasta	KIF13B	chr8	29062278	29268070
KIF13B_chr8_29062278_29268070	0/0	t0019	3263	1	0	0	0	0	1	copy fasta	KIF13B	chr8	29062278	29268070
KIF13B_chr8_29062278_29268070	0/0	t0020	3263	1	1	0	0	0	0	copy fasta	KIF13B	chr8	29062278	29268070
KIF13B_chr8_29062278_29268070	0/0	t0021	3263	1	0	0	1	0	0	copy fasta	KIF13B	chr8	29062278	29268070
KIF13B_chr8_29062278_29268070	0/0	t0022	3263	1	0	0	0	0	1	copy fasta	KIF13B	chr8	29062278	29268070
KIF13B_chr8_29062278_29268070	0/0	t0023	3263	1	1	0	0	0	0	copy fasta	KIF13B	chr8	29062278	29268070
KIF13B_chr8_29062278_29268070	0/0	t0024	3263	1	0	0	1	0	0	copy fasta	KIF13B	chr8	29062278	29268070
KIF13B_chr8_29062278_29268070	0/0	t0025	3263	1	0	0	1	0	0	copy fasta	KIF13B	chr8	29062278	29268070
KIF13B_chr8_29062278_29268070	0/0	t0026	3263	1	0	0	1	0	0	copy fasta	KIF13B	chr8	29062278	29268070
KIF13B_chr8_29062278_29268070	0/0	t0027	3263	1	1	0	0	0	0	copy fasta	KIF13B	chr8	29062278	29268070
KIF13B_chr8_29062278_29268070	0/0	t0028	3263	1	1	0	0	0	0	copy fasta	KIF13B	chr8	29062278	29268070
KIF13B_chr8_29062278_29268070	0/0	t0029	3263	1	1	0	0	0	0	copy fasta	KIF13B	chr8	29062278	29268070
KIF13B_chr8_29062278_29268070	0/0	t0030	3263	1	1	0	0	0	0	copy fasta	KIF13B	chr8	29062278	29268070
KIF13B_chr8_29062278_29268070	0/0	t0031	3263	1	0	0	1	0	0	copy fasta	KIF13B	chr8	29062278	29268070
KIF13B_chr8_29062278_29268070	0/0	t0032	3263	1	1	0	0	0	0	copy fasta	KIF13B	chr8	29062278	29268070
KIF13B_chr8_29062278_29268070	0/0	t0033	3263	1	1	0	0	0	0	copy fasta	KIF13B	chr8	29062278	29268070
KIF13B_chr8_29062278_29268070	0/0	t0034	3263	1	0	0	0	0	1	copy fasta	KIF13B	chr8	29062278	29268070
KIF13B_chr8_29062278_29268070	0/0	t0035	3263	1	1	0	0	0	0	copy fasta	KIF13B	chr8	29062278	29268070
KIF13B_chr8_29062278_29268070	0/0	t0036	3263	1	1	0	0	0	0	copy fasta	KIF13B	chr8	29062278	29268070
KIF13B_chr8_29062278_29268070	0/0	t0037	3262	1	1	0	0	0	0	copy fasta	KIF13B	chr8	29062278	29268070
KIF13B_chr8_29062278_29268070	0/0	t0038	3262	1	0	0	1	0	0	copy fasta	KIF13B	chr8	29062278	29268070
KIF13B_chr8_29062278_29268070	0/0	t0039	3263	1	1	0	0	0	0	copy fasta	KIF13B	chr8	29062278	29268070
KIF13B_chr8_29062278_29268070	0/0	t0040	3263	1	0	0	0	0	1	copy fasta	KIF13B	chr8	29062278	29268070
KIF13B_chr8_29062278_29268070	0/0	t0041	3263	1	0	0	0	0	1	copy fasta	KIF13B	chr8	29062278	29268070
KIF13B_chr8_29062278_29268070	0/0	t0042	3263	1	0	0	0	0	1	copy fasta	KIF13B	chr8	29062278	29268070
KIF13B_chr8_29062278_29268070	0/0	t0043	3263	1	0	0	1	0	0	copy fasta	KIF13B	chr8	29062278	29268070
KIF13B_chr8_29062278_29268070	0/0	t0044	3263	1	1	0	0	0	0	copy fasta	KIF13B	chr8	29062278	29268070
KIF13B_chr8_29062278_29268070	0/0	t0045	3263	1	0	1	0	0	0	copy fasta	KIF13B	chr8	29062278	29268070
KIF13B_chr8_29062278_29268070	0/0	t0046	3263	1	0	0	1	0	0	copy fasta	KIF13B	chr8	29062278	29268070
KIF13B_chr8_29062278_29268070	0/0	t0047	3263	1	0	0	1	0	0	copy fasta	KIF13B	chr8	29062278	29268070
KIF14_chr1_200546500_200625751	0/0	t0001	2332	68	16	12	35	1	4	copy fasta	KIF14	chr1	200546500	200625751
KIF14_chr1_200546500_200625751	0/1	t0002	2326	60	3	14	32	4	6	copy fasta	KIF14	chr1	200546500	200625751
KIF14_chr1_200546500_200625751	0/0	t0003	2336	36	2	2	24	0	8	copy fasta	KIF14	chr1	200546500	200625751