JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KIF14_chr1_200546500_200625751	1/0	t0004	2345	32	4	9	16	1	1	copy fasta	KIF14	chr1	200546500	200625751
KIF14_chr1_200546500_200625751	0/0	t0005	2345	28	0	5	21	0	2	copy fasta	KIF14	chr1	200546500	200625751
KIF14_chr1_200546500_200625751	0/0	t0006	2349	20	1	1	16	0	2	copy fasta	KIF14	chr1	200546500	200625751
KIF14_chr1_200546500_200625751	0/0	t0007	2325	18	0	2	8	4	4	copy fasta	KIF14	chr1	200546500	200625751
KIF14_chr1_200546500_200625751	0/0	t0008	2333	16	11	5	0	0	0	copy fasta	KIF14	chr1	200546500	200625751
KIF14_chr1_200546500_200625751	0/0	t0009	2336	16	16	0	0	0	0	copy fasta	KIF14	chr1	200546500	200625751
KIF14_chr1_200546500_200625751	0/0	t0010	2326	8	2	3	3	0	0	copy fasta	KIF14	chr1	200546500	200625751
KIF14_chr1_200546500_200625751	0/0	t0011	2341	8	3	3	0	2	0	copy fasta	KIF14	chr1	200546500	200625751
KIF14_chr1_200546500_200625751	0/0	t0012	2361	5	5	0	0	0	0	copy fasta	KIF14	chr1	200546500	200625751
KIF14_chr1_200546500_200625751	0/0	t0013	2332	5	3	1	1	0	0	copy fasta	KIF14	chr1	200546500	200625751
KIF14_chr1_200546500_200625751	0/0	t0014	2349	5	0	3	0	1	1	copy fasta	KIF14	chr1	200546500	200625751
KIF14_chr1_200546500_200625751	0/0	t0015	2333	4	4	0	0	0	0	copy fasta	KIF14	chr1	200546500	200625751
KIF14_chr1_200546500_200625751	0/0	t0016	2337	4	4	0	0	0	0	copy fasta	KIF14	chr1	200546500	200625751
KIF14_chr1_200546500_200625751	0/0	t0017	2326	4	0	0	4	0	0	copy fasta	KIF14	chr1	200546500	200625751
KIF14_chr1_200546500_200625751	0/0	t0018	2341	4	0	2	0	1	1	copy fasta	KIF14	chr1	200546500	200625751
KIF14_chr1_200546500_200625751	0/0	t0019	2340	3	3	0	0	0	0	copy fasta	KIF14	chr1	200546500	200625751
KIF14_chr1_200546500_200625751	0/0	t0020	2337	3	3	0	0	0	0	copy fasta	KIF14	chr1	200546500	200625751
KIF14_chr1_200546500_200625751	0/0	t0021	2337	3	3	0	0	0	0	copy fasta	KIF14	chr1	200546500	200625751
KIF14_chr1_200546500_200625751	0/0	t0022	2336	3	0	1	0	0	2	copy fasta	KIF14	chr1	200546500	200625751
KIF14_chr1_200546500_200625751	0/0	t0023	2345	3	1	0	1	0	1	copy fasta	KIF14	chr1	200546500	200625751
KIF14_chr1_200546500_200625751	0/0	t0024	2325	2	0	0	2	0	0	copy fasta	KIF14	chr1	200546500	200625751
KIF14_chr1_200546500_200625751	0/0	t0025	2325	2	1	0	1	0	0	copy fasta	KIF14	chr1	200546500	200625751
KIF14_chr1_200546500_200625751	0/0	t0026	2332	2	0	0	2	0	0	copy fasta	KIF14	chr1	200546500	200625751
KIF14_chr1_200546500_200625751	0/0	t0027	2337	2	0	2	0	0	0	copy fasta	KIF14	chr1	200546500	200625751
KIF14_chr1_200546500_200625751	0/0	t0028	2341	2	2	0	0	0	0	copy fasta	KIF14	chr1	200546500	200625751
KIF14_chr1_200546500_200625751	0/0	t0029	2336	2	2	0	0	0	0	copy fasta	KIF14	chr1	200546500	200625751
KIF14_chr1_200546500_200625751	0/0	t0030	2332	2	0	0	0	0	2	copy fasta	KIF14	chr1	200546500	200625751
KIF14_chr1_200546500_200625751	0/0	t0031	2325	1	0	0	0	0	1	copy fasta	KIF14	chr1	200546500	200625751
KIF14_chr1_200546500_200625751	0/0	t0032	2332	1	0	0	0	0	1	copy fasta	KIF14	chr1	200546500	200625751
KIF14_chr1_200546500_200625751	0/0	t0033	2336	1	0	0	1	0	0	copy fasta	KIF14	chr1	200546500	200625751
KIF14_chr1_200546500_200625751	0/0	t0034	2326	1	1	0	0	0	0	copy fasta	KIF14	chr1	200546500	200625751
KIF14_chr1_200546500_200625751	0/0	t0035	2333	1	1	0	0	0	0	copy fasta	KIF14	chr1	200546500	200625751
KIF14_chr1_200546500_200625751	0/0	t0036	2333	1	1	0	0	0	0	copy fasta	KIF14	chr1	200546500	200625751
KIF14_chr1_200546500_200625751	0/0	t0037	2337	1	1	0	0	0	0	copy fasta	KIF14	chr1	200546500	200625751
KIF14_chr1_200546500_200625751	0/0	t0038	2332	1	1	0	0	0	0	copy fasta	KIF14	chr1	200546500	200625751
KIF14_chr1_200546500_200625751	0/0	t0039	2336	1	1	0	0	0	0	copy fasta	KIF14	chr1	200546500	200625751
KIF14_chr1_200546500_200625751	0/0	t0040	2349	1	0	0	1	0	0	copy fasta	KIF14	chr1	200546500	200625751
KIF14_chr1_200546500_200625751	0/0	t0041	2337	1	1	0	0	0	0	copy fasta	KIF14	chr1	200546500	200625751
KIF14_chr1_200546500_200625751	0/0	t0042	2329	1	0	0	1	0	0	copy fasta	KIF14	chr1	200546500	200625751
KIF14_chr1_200546500_200625751	0/0	t0043	2330	1	0	0	1	0	0	copy fasta	KIF14	chr1	200546500	200625751
KIF14_chr1_200546500_200625751	0/0	t0044	2332	1	0	1	0	0	0	copy fasta	KIF14	chr1	200546500	200625751
KIF14_chr1_200546500_200625751	0/0	t0045	2326	1	0	0	1	0	0	copy fasta	KIF14	chr1	200546500	200625751
KIF14_chr1_200546500_200625751	0/0	t0046	2326	1	0	0	0	0	1	copy fasta	KIF14	chr1	200546500	200625751
KIF14_chr1_200546500_200625751	0/0	t0047	2336	1	0	1	0	0	0	copy fasta	KIF14	chr1	200546500	200625751
KIF14_chr1_200546500_200625751	0/0	t0048	2349	1	0	0	0	0	1	copy fasta	KIF14	chr1	200546500	200625751
KIF14_chr1_200546500_200625751	0/0	t0049	2336	1	0	0	1	0	0	copy fasta	KIF14	chr1	200546500	200625751
KIF14_chr1_200546500_200625751	0/0	t0050	2337	1	0	1	0	0	0	copy fasta	KIF14	chr1	200546500	200625751
KIF15_chr3_44756794_44858256	1/1	t0001	594	211	73	56	47	11	22	copy fasta	KIF15	chr3	44756794	44858256
KIF15_chr3_44756794_44858256	0/0	t0002	594	14	12	0	1	1	0	copy fasta	KIF15	chr3	44756794	44858256
KIF15_chr3_44756794_44858256	0/0	t0003	594	7	7	0	0	0	0	copy fasta	KIF15	chr3	44756794	44858256