JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KIF16B_chr20_16267104_16578448	0/1	t0001	1323	89	31	19	26	4	8	copy fasta	KIF16B	chr20	16267104	16578448
KIF16B_chr20_16267104_16578448	0/0	t0002	1323	54	18	8	23	0	5	copy fasta	KIF16B	chr20	16267104	16578448
KIF16B_chr20_16267104_16578448	0/0	t0003	1323	27	10	8	5	0	4	copy fasta	KIF16B	chr20	16267104	16578448
KIF16B_chr20_16267104_16578448	1/0	t0004	1323	24	1	5	11	2	4	copy fasta	KIF16B	chr20	16267104	16578448
KIF16B_chr20_16267104_16578448	0/0	t0005	1323	10	1	1	6	1	1	copy fasta	KIF16B	chr20	16267104	16578448
KIF16B_chr20_16267104_16578448	0/0	t0006	1323	9	8	0	1	0	0	copy fasta	KIF16B	chr20	16267104	16578448
KIF16B_chr20_16267104_16578448	0/0	t0007	1323	8	0	3	3	0	2	copy fasta	KIF16B	chr20	16267104	16578448
KIF16B_chr20_16267104_16578448	0/0	t0008	1323	4	0	1	3	0	0	copy fasta	KIF16B	chr20	16267104	16578448
KIF16B_chr20_16267104_16578448	0/0	t0009	1323	4	4	0	0	0	0	copy fasta	KIF16B	chr20	16267104	16578448
KIF16B_chr20_16267104_16578448	0/0	t0010	1323	4	2	0	2	0	0	copy fasta	KIF16B	chr20	16267104	16578448
KIF16B_chr20_16267104_16578448	0/0	t0011	1323	3	3	0	0	0	0	copy fasta	KIF16B	chr20	16267104	16578448
KIF16B_chr20_16267104_16578448	0/0	t0012	1323	2	1	0	1	0	0	copy fasta	KIF16B	chr20	16267104	16578448
KIF16B_chr20_16267104_16578448	0/0	t0013	1323	2	0	2	0	0	0	copy fasta	KIF16B	chr20	16267104	16578448
KIF16B_chr20_16267104_16578448	0/0	t0014	1323	1	0	0	1	0	0	copy fasta	KIF16B	chr20	16267104	16578448
KIF16B_chr20_16267104_16578448	0/0	t0015	1323	1	1	0	0	0	0	copy fasta	KIF16B	chr20	16267104	16578448
KIF16B_chr20_16267104_16578448	0/0	t0016	1323	1	0	0	0	1	0	copy fasta	KIF16B	chr20	16267104	16578448
KIF16B_chr20_16267104_16578448	0/0	t0017	1323	1	1	0	0	0	0	copy fasta	KIF16B	chr20	16267104	16578448
KIF16B_chr20_16267104_16578448	0/0	t0018	1323	1	1	0	0	0	0	copy fasta	KIF16B	chr20	16267104	16578448
KIF16B_chr20_16267104_16578448	0/0	t0019	1323	1	0	0	1	0	0	copy fasta	KIF16B	chr20	16267104	16578448
KIF16B_chr20_16267104_16578448	0/0	t0020	1323	1	1	0	0	0	0	copy fasta	KIF16B	chr20	16267104	16578448
KIF16B_chr20_16267104_16578448	0/0	t0021	1323	1	1	0	0	0	0	copy fasta	KIF16B	chr20	16267104	16578448
KIF16B_chr20_16267104_16578448	0/0	t0022	1323	1	0	0	1	0	0	copy fasta	KIF16B	chr20	16267104	16578448
KIF16B_chr20_16267104_16578448	0/0	t0023	1323	1	0	1	0	0	0	copy fasta	KIF16B	chr20	16267104	16578448
KIF17_chr1_20659014_20723007	0/1	t0001	871	325	61	56	157	11	39	copy fasta	KIF17	chr1	20659014	20723007
KIF17_chr1_20659014_20723007	0/0	t0002	871	38	13	9	8	4	4	copy fasta	KIF17	chr1	20659014	20723007
KIF17_chr1_20659014_20723007	0/0	t0003	878	9	0	8	1	0	0	copy fasta	KIF17	chr1	20659014	20723007
KIF17_chr1_20659014_20723007	0/0	t0004	871	9	9	0	0	0	0	copy fasta	KIF17	chr1	20659014	20723007
KIF17_chr1_20659014_20723007	0/0	t0005	871	8	1	4	0	1	2	copy fasta	KIF17	chr1	20659014	20723007
KIF17_chr1_20659014_20723007	0/0	t0006	871	4	4	0	0	0	0	copy fasta	KIF17	chr1	20659014	20723007
KIF17_chr1_20659014_20723007	0/0	t0007	871	4	4	0	0	0	0	copy fasta	KIF17	chr1	20659014	20723007
KIF17_chr1_20659014_20723007	0/0	t0008	871	3	0	0	3	0	0	copy fasta	KIF17	chr1	20659014	20723007
KIF17_chr1_20659014_20723007	0/0	t0009	871	3	0	0	3	0	0	copy fasta	KIF17	chr1	20659014	20723007
KIF17_chr1_20659014_20723007	0/0	t0010	871	2	0	0	2	0	0	copy fasta	KIF17	chr1	20659014	20723007
KIF17_chr1_20659014_20723007	0/0	t0011	853	2	2	0	0	0	0	copy fasta	KIF17	chr1	20659014	20723007
KIF17_chr1_20659014_20723007	0/0	t0012	839	1	0	1	0	0	0	copy fasta	KIF17	chr1	20659014	20723007
KIF17_chr1_20659014_20723007	1/0	t0013	872	1	0	0	0	0	0	copy fasta	KIF17	chr1	20659014	20723007
KIF17_chr1_20659014_20723007	0/0	t0014	871	1	0	0	0	0	1	copy fasta	KIF17	chr1	20659014	20723007
KIF17_chr1_20659014_20723007	0/0	t0015	871	1	1	0	0	0	0	copy fasta	KIF17	chr1	20659014	20723007
KIF17_chr1_20659014_20723007	0/0	t0016	871	1	0	0	1	0	0	copy fasta	KIF17	chr1	20659014	20723007
KIF17_chr1_20659014_20723007	0/0	t0017	853	1	1	0	0	0	0	copy fasta	KIF17	chr1	20659014	20723007
KIF17_chr1_20659014_20723007	0/0	t0018	871	1	0	0	1	0	0	copy fasta	KIF17	chr1	20659014	20723007
KIF18A_chr11_28015619_28113156	1/1	t0001	721	339	84	40	173	4	36	copy fasta	KIF18A	chr11	28015619	28113156
KIF18A_chr11_28015619_28113156	0/0	t0002	721	2	0	0	2	0	0	copy fasta	KIF18A	chr11	28015619	28113156
KIF18A_chr11_28015619_28113156	0/0	t0003	721	1	0	0	1	0	0	copy fasta	KIF18A	chr11	28015619	28113156
KIF18A_chr11_28015619_28113156	0/0	t0004	721	1	0	0	1	0	0	copy fasta	KIF18A	chr11	28015619	28113156
KIF18A_chr11_28015619_28113156	0/0	t0005	721	1	0	0	0	0	1	copy fasta	KIF18A	chr11	28015619	28113156
KIF18A_chr11_28015619_28113156	0/0	t0006	721	1	0	0	0	0	1	copy fasta	KIF18A	chr11	28015619	28113156
KIF18A_chr11_28015619_28113156	0/0	t0007	721	1	0	0	1	0	0	copy fasta	KIF18A	chr11	28015619	28113156
KIF18B_chr17_44919711_44952773	0/0	t0001	1530	147	41	25	60	4	17	copy fasta	KIF18B	chr17	44919711	44952773
KIF18B_chr17_44919711_44952773	1/0	t0002	1530	126	15	18	76	5	11	copy fasta	KIF18B	chr17	44919711	44952773