JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KIF18B_chr17_44919711_44952773	0/0	t0003	1526	46	14	6	20	2	4	copy fasta	KIF18B	chr17	44919711	44952773
KIF18B_chr17_44919711_44952773	0/0	t0004	1530	41	0	4	26	3	8	copy fasta	KIF18B	chr17	44919711	44952773
KIF18B_chr17_44919711_44952773	0/1	t0005	1526	21	2	9	4	1	4	copy fasta	KIF18B	chr17	44919711	44952773
KIF18B_chr17_44919711_44952773	0/0	t0006	1526	7	4	2	0	1	0	copy fasta	KIF18B	chr17	44919711	44952773
KIF18B_chr17_44919711_44952773	0/0	t0007	1526	4	4	0	0	0	0	copy fasta	KIF18B	chr17	44919711	44952773
KIF18B_chr17_44919711_44952773	0/0	t0008	1526	4	4	0	0	0	0	copy fasta	KIF18B	chr17	44919711	44952773
KIF18B_chr17_44919711_44952773	0/0	t0009	1526	3	3	0	0	0	0	copy fasta	KIF18B	chr17	44919711	44952773
KIF18B_chr17_44919711_44952773	0/0	t0010	1530	1	1	0	0	0	0	copy fasta	KIF18B	chr17	44919711	44952773
KIF18B_chr17_44919711_44952773	0/0	t0011	1526	1	1	0	0	0	0	copy fasta	KIF18B	chr17	44919711	44952773
KIF18B_chr17_44919711_44952773	0/0	t0012	1526	1	1	0	0	0	0	copy fasta	KIF18B	chr17	44919711	44952773
KIF18B_chr17_44919711_44952773	0/0	t0013	1526	1	1	0	0	0	0	copy fasta	KIF18B	chr17	44919711	44952773
KIF18B_chr17_44919711_44952773	0/0	t0014	1530	1	0	1	0	0	0	copy fasta	KIF18B	chr17	44919711	44952773
KIF18B_chr17_44919711_44952773	0/0	t0015	1530	1	0	1	0	0	0	copy fasta	KIF18B	chr17	44919711	44952773
KIF18B_chr17_44919711_44952773	0/0	t0016	1530	1	1	0	0	0	0	copy fasta	KIF18B	chr17	44919711	44952773
KIF19_chr17_74321226_74360820	0/0	t0001	633	140	5	27	84	6	18	copy fasta	KIF19	chr17	74321226	74360820
KIF19_chr17_74321226_74360820	0/1	t0002	633	122	55	20	29	6	11	copy fasta	KIF19	chr17	74321226	74360820
KIF19_chr17_74321226_74360820	0/0	t0003	633	90	9	16	52	2	11	copy fasta	KIF19	chr17	74321226	74360820
KIF19_chr17_74321226_74360820	1/0	t0004	633	39	12	5	17	1	3	copy fasta	KIF19	chr17	74321226	74360820
KIF19_chr17_74321226_74360820	0/0	t0005	660	14	13	1	0	0	0	copy fasta	KIF19	chr17	74321226	74360820
KIF19_chr17_74321226_74360820	0/0	t0006	687	4	3	1	0	0	0	copy fasta	KIF19	chr17	74321226	74360820
KIF19_chr17_74321226_74360820	0/0	t0007	633	1	0	0	0	0	1	copy fasta	KIF19	chr17	74321226	74360820
KIF19_chr17_74321226_74360820	0/0	t0008	633	1	0	0	0	1	0	copy fasta	KIF19	chr17	74321226	74360820
KIF19_chr17_74321226_74360820	0/0	t0009	633	1	1	0	0	0	0	copy fasta	KIF19	chr17	74321226	74360820
KIF1A_chr2_240708767_240825219	1/0	t0001	3756	73	12	3	31	4	22	copy fasta	KIF1A	chr2	240708767	240825219
KIF1A_chr2_240708767_240825219	0/0	t0002	3756	44	7	11	22	3	1	copy fasta	KIF1A	chr2	240708767	240825219
KIF1A_chr2_240708767_240825219	0/0	t0003	3756	34	0	12	21	1	0	copy fasta	KIF1A	chr2	240708767	240825219
KIF1A_chr2_240708767_240825219	0/0	t0004	3756	23	12	3	7	1	0	copy fasta	KIF1A	chr2	240708767	240825219
KIF1A_chr2_240708767_240825219	0/0	t0005	3756	22	8	4	7	2	1	copy fasta	KIF1A	chr2	240708767	240825219
KIF1A_chr2_240708767_240825219	0/0	t0006	3756	21	5	11	2	2	1	copy fasta	KIF1A	chr2	240708767	240825219
KIF1A_chr2_240708767_240825219	0/0	t0007	3756	17	13	3	0	0	1	copy fasta	KIF1A	chr2	240708767	240825219
KIF1A_chr2_240708767_240825219	0/0	t0008	3756	11	0	1	10	0	0	copy fasta	KIF1A	chr2	240708767	240825219
KIF1A_chr2_240708767_240825219	0/0	t0009	3756	10	10	0	0	0	0	copy fasta	KIF1A	chr2	240708767	240825219
KIF1A_chr2_240708767_240825219	0/0	t0010	3756	8	8	0	0	0	0	copy fasta	KIF1A	chr2	240708767	240825219
KIF1A_chr2_240708767_240825219	0/0	t0011	3756	8	0	0	8	0	0	copy fasta	KIF1A	chr2	240708767	240825219
KIF1A_chr2_240708767_240825219	0/0	t0012	3756	5	0	3	0	0	2	copy fasta	KIF1A	chr2	240708767	240825219
KIF1A_chr2_240708767_240825219	0/0	t0013	3756	4	0	2	1	1	0	copy fasta	KIF1A	chr2	240708767	240825219
KIF1A_chr2_240708767_240825219	0/0	t0014	3756	4	4	0	0	0	0	copy fasta	KIF1A	chr2	240708767	240825219
KIF1A_chr2_240708767_240825219	0/1	t0015	3756	3	0	0	0	0	2	copy fasta	KIF1A	chr2	240708767	240825219
KIF1A_chr2_240708767_240825219	0/0	t0016	3756	3	2	0	1	0	0	copy fasta	KIF1A	chr2	240708767	240825219
KIF1A_chr2_240708767_240825219	0/0	t0017	3756	3	3	0	0	0	0	copy fasta	KIF1A	chr2	240708767	240825219
KIF1A_chr2_240708767_240825219	0/0	t0018	3756	2	0	0	2	0	0	copy fasta	KIF1A	chr2	240708767	240825219
KIF1A_chr2_240708767_240825219	0/0	t0019	3756	2	0	0	2	0	0	copy fasta	KIF1A	chr2	240708767	240825219
KIF1A_chr2_240708767_240825219	0/0	t0020	3756	2	0	1	0	1	0	copy fasta	KIF1A	chr2	240708767	240825219
KIF1A_chr2_240708767_240825219	0/0	t0021	3756	2	0	0	2	0	0	copy fasta	KIF1A	chr2	240708767	240825219
KIF1A_chr2_240708767_240825219	0/0	t0022	3756	2	2	0	0	0	0	copy fasta	KIF1A	chr2	240708767	240825219
KIF1A_chr2_240708767_240825219	0/0	t0023	3756	2	0	1	0	1	0	copy fasta	KIF1A	chr2	240708767	240825219
KIF1A_chr2_240708767_240825219	0/0	t0024	3756	2	0	0	0	0	2	copy fasta	KIF1A	chr2	240708767	240825219
KIF1A_chr2_240708767_240825219	0/0	t0025	3756	1	0	1	0	0	0	copy fasta	KIF1A	chr2	240708767	240825219
KIF1A_chr2_240708767_240825219	0/0	t0026	3756	1	0	0	1	0	0	copy fasta	KIF1A	chr2	240708767	240825219
KIF1A_chr2_240708767_240825219	0/0	t0027	3756	1	0	0	1	0	0	copy fasta	KIF1A	chr2	240708767	240825219