JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KIF1A_chr2_240708767_240825219	0/0	t0028	3756	1	1	0	0	0	0	copy fasta	KIF1A	chr2	240708767	240825219
KIF1A_chr2_240708767_240825219	0/0	t0029	3756	1	1	0	0	0	0	copy fasta	KIF1A	chr2	240708767	240825219
KIF1A_chr2_240708767_240825219	0/0	t0030	3756	1	0	0	1	0	0	copy fasta	KIF1A	chr2	240708767	240825219
KIF1A_chr2_240708767_240825219	0/0	t0031	3756	1	1	0	0	0	0	copy fasta	KIF1A	chr2	240708767	240825219
KIF1A_chr2_240708767_240825219	0/0	t0032	3756	1	0	0	0	0	1	copy fasta	KIF1A	chr2	240708767	240825219
KIF1A_chr2_240708767_240825219	0/0	t0033	3756	1	1	0	0	0	0	copy fasta	KIF1A	chr2	240708767	240825219
KIF1A_chr2_240708767_240825219	0/0	t0034	3756	1	0	0	1	0	0	copy fasta	KIF1A	chr2	240708767	240825219
KIF1A_chr2_240708767_240825219	0/0	t0035	3756	1	1	0	0	0	0	copy fasta	KIF1A	chr2	240708767	240825219
KIF1A_chr2_240708767_240825219	0/0	t0036	3756	1	0	0	0	0	1	copy fasta	KIF1A	chr2	240708767	240825219
KIF1A_chr2_240708767_240825219	0/0	t0037	3756	1	1	0	0	0	0	copy fasta	KIF1A	chr2	240708767	240825219
KIF1A_chr2_240708767_240825219	0/0	t0038	3756	1	0	1	0	0	0	copy fasta	KIF1A	chr2	240708767	240825219
KIF1A_chr2_240708767_240825219	0/0	t0039	3756	1	0	0	1	0	0	copy fasta	KIF1A	chr2	240708767	240825219
KIF1A_chr2_240708767_240825219	0/0	t0040	3756	1	0	0	1	0	0	copy fasta	KIF1A	chr2	240708767	240825219
KIF1A_chr2_240708767_240825219	0/0	t0041	3756	1	0	0	1	0	0	copy fasta	KIF1A	chr2	240708767	240825219
KIF1A_chr2_240708767_240825219	0/0	t0042	3756	1	0	1	0	0	0	copy fasta	KIF1A	chr2	240708767	240825219
KIF1A_chr2_240708767_240825219	0/0	t0043	3756	1	1	0	0	0	0	copy fasta	KIF1A	chr2	240708767	240825219
KIF1A_chr2_240708767_240825219	0/0	t0044	3756	1	1	0	0	0	0	copy fasta	KIF1A	chr2	240708767	240825219
KIF1A_chr2_240708767_240825219	0/0	t0045	3756	1	0	0	1	0	0	copy fasta	KIF1A	chr2	240708767	240825219
KIF1A_chr2_240708767_240825219	0/0	t0046	3756	1	0	0	0	0	1	copy fasta	KIF1A	chr2	240708767	240825219
KIF1A_chr2_240708767_240825219	0/0	t0047	3756	1	0	0	0	0	1	copy fasta	KIF1A	chr2	240708767	240825219
KIF1B_chr1_10205570_10386603	1/0	t0001	5405	82	7	17	41	5	11	copy fasta	KIF1B	chr1	10205570	10386603
KIF1B_chr1_10205570_10386603	0/0	t0002	5403	36	3	17	10	2	4	copy fasta	KIF1B	chr1	10205570	10386603
KIF1B_chr1_10205570_10386603	0/0	t0003	5401	25	6	7	11	0	1	copy fasta	KIF1B	chr1	10205570	10386603
KIF1B_chr1_10205570_10386603	0/1	t0004	5403	18	4	3	2	2	6	copy fasta	KIF1B	chr1	10205570	10386603
KIF1B_chr1_10205570_10386603	0/0	t0005	5403	16	0	0	16	0	0	copy fasta	KIF1B	chr1	10205570	10386603
KIF1B_chr1_10205570_10386603	0/0	t0006	5403	14	12	2	0	0	0	copy fasta	KIF1B	chr1	10205570	10386603
KIF1B_chr1_10205570_10386603	0/0	t0007	5405	9	9	0	0	0	0	copy fasta	KIF1B	chr1	10205570	10386603
KIF1B_chr1_10205570_10386603	0/0	t0008	5401	7	7	0	0	0	0	copy fasta	KIF1B	chr1	10205570	10386603
KIF1B_chr1_10205570_10386603	0/0	t0009	5405	6	1	0	5	0	0	copy fasta	KIF1B	chr1	10205570	10386603
KIF1B_chr1_10205570_10386603	0/0	t0010	5403	6	2	0	1	0	3	copy fasta	KIF1B	chr1	10205570	10386603
KIF1B_chr1_10205570_10386603	0/0	t0011	5407	4	1	3	0	0	0	copy fasta	KIF1B	chr1	10205570	10386603
KIF1B_chr1_10205570_10386603	0/0	t0012	5403	4	0	2	2	0	0	copy fasta	KIF1B	chr1	10205570	10386603
KIF1B_chr1_10205570_10386603	0/0	t0013	5409	3	2	1	0	0	0	copy fasta	KIF1B	chr1	10205570	10386603
KIF1B_chr1_10205570_10386603	0/0	t0014	5407	3	3	0	0	0	0	copy fasta	KIF1B	chr1	10205570	10386603
KIF1B_chr1_10205570_10386603	0/0	t0015	5405	3	0	3	0	0	0	copy fasta	KIF1B	chr1	10205570	10386603
KIF1B_chr1_10205570_10386603	0/0	t0016	5403	3	2	1	0	0	0	copy fasta	KIF1B	chr1	10205570	10386603
KIF1B_chr1_10205570_10386603	0/0	t0017	5403	3	3	0	0	0	0	copy fasta	KIF1B	chr1	10205570	10386603
KIF1B_chr1_10205570_10386603	0/0	t0018	5401	3	0	0	3	0	0	copy fasta	KIF1B	chr1	10205570	10386603
KIF1B_chr1_10205570_10386603	0/0	t0019	5399	3	3	0	0	0	0	copy fasta	KIF1B	chr1	10205570	10386603
KIF1B_chr1_10205570_10386603	0/0	t0020	5405	2	2	0	0	0	0	copy fasta	KIF1B	chr1	10205570	10386603
KIF1B_chr1_10205570_10386603	0/0	t0021	5405	2	0	2	0	0	0	copy fasta	KIF1B	chr1	10205570	10386603
KIF1B_chr1_10205570_10386603	0/0	t0022	5405	2	2	0	0	0	0	copy fasta	KIF1B	chr1	10205570	10386603
KIF1B_chr1_10205570_10386603	0/0	t0023	5405	2	0	1	0	0	1	copy fasta	KIF1B	chr1	10205570	10386603
KIF1B_chr1_10205570_10386603	0/0	t0024	5403	2	0	0	0	0	2	copy fasta	KIF1B	chr1	10205570	10386603
KIF1B_chr1_10205570_10386603	0/0	t0025	5403	2	2	0	0	0	0	copy fasta	KIF1B	chr1	10205570	10386603
KIF1B_chr1_10205570_10386603	0/0	t0026	5403	2	0	0	0	0	2	copy fasta	KIF1B	chr1	10205570	10386603
KIF1B_chr1_10205570_10386603	0/0	t0027	5405	2	0	0	2	0	0	copy fasta	KIF1B	chr1	10205570	10386603
KIF1B_chr1_10205570_10386603	0/0	t0028	5403	1	1	0	0	0	0	copy fasta	KIF1B	chr1	10205570	10386603
KIF1B_chr1_10205570_10386603	0/0	t0029	5407	1	1	0	0	0	0	copy fasta	KIF1B	chr1	10205570	10386603
KIF1B_chr1_10205570_10386603	0/0	t0030	5417	1	1	0	0	0	0	copy fasta	KIF1B	chr1	10205570	10386603