JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KIF1B_chr1_10205570_10386603	0/0	t0031	5401	1	0	0	1	0	0	copy fasta	KIF1B	chr1	10205570	10386603
KIF1B_chr1_10205570_10386603	0/0	t0032	5407	1	1	0	0	0	0	copy fasta	KIF1B	chr1	10205570	10386603
KIF1B_chr1_10205570_10386603	0/0	t0033	5405	1	1	0	0	0	0	copy fasta	KIF1B	chr1	10205570	10386603
KIF1B_chr1_10205570_10386603	0/0	t0034	5405	1	1	0	0	0	0	copy fasta	KIF1B	chr1	10205570	10386603
KIF1B_chr1_10205570_10386603	0/0	t0035	5405	1	0	0	1	0	0	copy fasta	KIF1B	chr1	10205570	10386603
KIF1B_chr1_10205570_10386603	0/0	t0036	5405	1	0	0	1	0	0	copy fasta	KIF1B	chr1	10205570	10386603
KIF1B_chr1_10205570_10386603	0/0	t0037	5405	1	0	0	1	0	0	copy fasta	KIF1B	chr1	10205570	10386603
KIF1B_chr1_10205570_10386603	0/0	t0038	5405	1	1	0	0	0	0	copy fasta	KIF1B	chr1	10205570	10386603
KIF1B_chr1_10205570_10386603	0/0	t0039	5405	1	0	1	0	0	0	copy fasta	KIF1B	chr1	10205570	10386603
KIF1B_chr1_10205570_10386603	0/0	t0040	5405	1	1	0	0	0	0	copy fasta	KIF1B	chr1	10205570	10386603
KIF1B_chr1_10205570_10386603	0/0	t0041	5405	1	0	0	1	0	0	copy fasta	KIF1B	chr1	10205570	10386603
KIF1B_chr1_10205570_10386603	0/0	t0042	5405	1	0	0	0	0	1	copy fasta	KIF1B	chr1	10205570	10386603
KIF1B_chr1_10205570_10386603	0/0	t0043	5405	1	0	1	0	0	0	copy fasta	KIF1B	chr1	10205570	10386603
KIF1B_chr1_10205570_10386603	0/0	t0044	5405	1	0	1	0	0	0	copy fasta	KIF1B	chr1	10205570	10386603
KIF1B_chr1_10205570_10386603	0/0	t0045	5403	1	0	0	0	0	1	copy fasta	KIF1B	chr1	10205570	10386603
KIF1B_chr1_10205570_10386603	0/0	t0046	5403	1	1	0	0	0	0	copy fasta	KIF1B	chr1	10205570	10386603
KIF1B_chr1_10205570_10386603	0/0	t0047	5403	1	1	0	0	0	0	copy fasta	KIF1B	chr1	10205570	10386603
KIF1B_chr1_10205570_10386603	0/0	t0048	5403	1	0	0	0	0	1	copy fasta	KIF1B	chr1	10205570	10386603
KIF1B_chr1_10205570_10386603	0/0	t0049	5401	1	1	0	0	0	0	copy fasta	KIF1B	chr1	10205570	10386603
KIF1B_chr1_10205570_10386603	0/0	t0050	5389	1	1	0	0	0	0	copy fasta	KIF1B	chr1	10205570	10386603
KIF1B_chr1_10205570_10386603	0/0	t0051	5389	1	1	0	0	0	0	copy fasta	KIF1B	chr1	10205570	10386603
KIF1B_chr1_10205570_10386603	0/0	t0052	5403	1	1	0	0	0	0	copy fasta	KIF1B	chr1	10205570	10386603
KIF1B_chr1_10205570_10386603	0/0	t0053	5405	1	0	0	0	1	0	copy fasta	KIF1B	chr1	10205570	10386603
KIF1B_chr1_10205570_10386603	0/0	t0054	5403	1	1	0	0	0	0	copy fasta	KIF1B	chr1	10205570	10386603
KIF1B_chr1_10205570_10386603	0/0	t0055	5405	1	0	0	0	0	1	copy fasta	KIF1B	chr1	10205570	10386603
KIF1B_chr1_10205570_10386603	0/0	t0056	5403	1	0	0	0	0	1	copy fasta	KIF1B	chr1	10205570	10386603
KIF1B_chr1_10205570_10386603	0/0	t0057	5399	1	0	0	1	0	0	copy fasta	KIF1B	chr1	10205570	10386603
KIF1B_chr1_10205570_10386603	0/0	t0058	5403	1	0	0	0	0	1	copy fasta	KIF1B	chr1	10205570	10386603
KIF1B_chr1_10205570_10386603	0/0	t0059	5399	1	1	0	0	0	0	copy fasta	KIF1B	chr1	10205570	10386603
KIF1B_chr1_10205570_10386603	0/0	t0060	5399	1	1	0	0	0	0	copy fasta	KIF1B	chr1	10205570	10386603
KIF1B_chr1_10205570_10386603	0/0	t0061	5403	1	1	0	0	0	0	copy fasta	KIF1B	chr1	10205570	10386603
KIF1B_chr1_10205570_10386603	0/0	t0062	5409	1	0	0	1	0	0	copy fasta	KIF1B	chr1	10205570	10386603
KIF1B_chr1_10205570_10386603	0/0	t0063	5405	1	1	0	0	0	0	copy fasta	KIF1B	chr1	10205570	10386603
KIF1C_chr17_4992950_5033401	0/0	t0001	4608	74	2	11	46	3	12	copy fasta	KIF1C	chr17	4992950	5033401
KIF1C_chr17_4992950_5033401	0/1	t0002	4607	59	13	13	15	5	12	copy fasta	KIF1C	chr17	4992950	5033401
KIF1C_chr17_4992950_5033401	1/0	t0003	4606	29	1	2	23	0	2	copy fasta	KIF1C	chr17	4992950	5033401
KIF1C_chr17_4992950_5033401	0/0	t0004	4606	27	4	12	9	1	1	copy fasta	KIF1C	chr17	4992950	5033401
KIF1C_chr17_4992950_5033401	0/0	t0005	4610	18	1	2	13	1	1	copy fasta	KIF1C	chr17	4992950	5033401
KIF1C_chr17_4992950_5033401	0/0	t0006	4608	17	14	3	0	0	0	copy fasta	KIF1C	chr17	4992950	5033401
KIF1C_chr17_4992950_5033401	0/0	t0007	4607	14	1	13	0	0	0	copy fasta	KIF1C	chr17	4992950	5033401
KIF1C_chr17_4992950_5033401	0/0	t0008	4609	12	0	4	8	0	0	copy fasta	KIF1C	chr17	4992950	5033401
KIF1C_chr17_4992950_5033401	0/0	t0009	4608	12	5	0	4	1	2	copy fasta	KIF1C	chr17	4992950	5033401
KIF1C_chr17_4992950_5033401	0/0	t0010	4603	9	9	0	0	0	0	copy fasta	KIF1C	chr17	4992950	5033401
KIF1C_chr17_4992950_5033401	0/0	t0011	4608	7	3	4	0	0	0	copy fasta	KIF1C	chr17	4992950	5033401
KIF1C_chr17_4992950_5033401	0/0	t0012	4610	4	0	0	4	0	0	copy fasta	KIF1C	chr17	4992950	5033401
KIF1C_chr17_4992950_5033401	0/0	t0013	4607	4	1	2	0	0	1	copy fasta	KIF1C	chr17	4992950	5033401
KIF1C_chr17_4992950_5033401	0/0	t0014	4603	3	3	0	0	0	0	copy fasta	KIF1C	chr17	4992950	5033401
KIF1C_chr17_4992950_5033401	0/0	t0015	4608	3	0	0	3	0	0	copy fasta	KIF1C	chr17	4992950	5033401
KIF1C_chr17_4992950_5033401	0/0	t0016	4605	3	3	0	0	0	0	copy fasta	KIF1C	chr17	4992950	5033401
KIF1C_chr17_4992950_5033401	0/0	t0017	4608	3	3	0	0	0	0	copy fasta	KIF1C	chr17	4992950	5033401