JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KIF1C_chr17_4992950_5033401	0/0	t0068	4607	1	1	0	0	0	0	copy fasta	KIF1C	chr17	4992950	5033401
KIF1C_chr17_4992950_5033401	0/0	t0069	4608	1	1	0	0	0	0	copy fasta	KIF1C	chr17	4992950	5033401
KIF20A_chr5_138174112_138192723	1/0	t0001	423	253	69	45	97	11	30	copy fasta	KIF20A	chr5	138174112	138192723
KIF20A_chr5_138174112_138192723	0/1	t0002	423	133	8	32	74	5	13	copy fasta	KIF20A	chr5	138174112	138192723
KIF20A_chr5_138174112_138192723	0/0	t0003	423	17	14	2	1	0	0	copy fasta	KIF20A	chr5	138174112	138192723
KIF20A_chr5_138174112_138192723	0/0	t0004	423	3	0	3	0	0	0	copy fasta	KIF20A	chr5	138174112	138192723
KIF20A_chr5_138174112_138192723	0/0	t0005	423	3	3	0	0	0	0	copy fasta	KIF20A	chr5	138174112	138192723
KIF20A_chr5_138174112_138192723	0/0	t0006	423	1	0	0	0	0	1	copy fasta	KIF20A	chr5	138174112	138192723
KIF20B_chr10_89696590_89779934	1/1	t0001	978	233	48	55	99	12	17	copy fasta	KIF20B	chr10	89696590	89779934
KIF20B_chr10_89696590_89779934	0/0	t0002	978	136	34	15	54	4	29	copy fasta	KIF20B	chr10	89696590	89779934
KIF20B_chr10_89696590_89779934	0/0	t0003	978	3	3	0	0	0	0	copy fasta	KIF20B	chr10	89696590	89779934
KIF20B_chr10_89696590_89779934	0/0	t0004	978	3	3	0	0	0	0	copy fasta	KIF20B	chr10	89696590	89779934
KIF20B_chr10_89696590_89779934	0/0	t0005	978	2	1	1	0	0	0	copy fasta	KIF20B	chr10	89696590	89779934
KIF20B_chr10_89696590_89779934	0/0	t0006	978	1	0	1	0	0	0	copy fasta	KIF20B	chr10	89696590	89779934
KIF20B_chr10_89696590_89779934	0/0	t0007	978	1	0	0	1	0	0	copy fasta	KIF20B	chr10	89696590	89779934
KIF20B_chr10_89696590_89779934	0/0	t0008	978	1	1	0	0	0	0	copy fasta	KIF20B	chr10	89696590	89779934
KIF20B_chr10_89696590_89779934	0/0	t0009	978	1	0	1	0	0	0	copy fasta	KIF20B	chr10	89696590	89779934
KIF20B_chr10_89696590_89779934	0/0	t0010	978	1	0	1	0	0	0	copy fasta	KIF20B	chr10	89696590	89779934
KIF21A_chr12_39288228_39448120	1/1	t0001	1347	129	26	26	55	5	15	copy fasta	KIF21A	chr12	39288228	39448120
KIF21A_chr12_39288228_39448120	0/0	t0002	1346	73	6	10	42	1	14	copy fasta	KIF21A	chr12	39288228	39448120
KIF21A_chr12_39288228_39448120	0/0	t0003	1347	40	12	8	12	2	6	copy fasta	KIF21A	chr12	39288228	39448120
KIF21A_chr12_39288228_39448120	0/0	t0004	1348	15	15	0	0	0	0	copy fasta	KIF21A	chr12	39288228	39448120
KIF21A_chr12_39288228_39448120	0/0	t0005	1346	11	6	1	4	0	0	copy fasta	KIF21A	chr12	39288228	39448120
KIF21A_chr12_39288228_39448120	0/0	t0006	1348	8	5	0	2	0	1	copy fasta	KIF21A	chr12	39288228	39448120
KIF21A_chr12_39288228_39448120	0/0	t0007	1347	7	0	0	7	0	0	copy fasta	KIF21A	chr12	39288228	39448120
KIF21A_chr12_39288228_39448120	0/0	t0008	1347	4	2	2	0	0	0	copy fasta	KIF21A	chr12	39288228	39448120
KIF21A_chr12_39288228_39448120	0/0	t0009	1347	2	2	0	0	0	0	copy fasta	KIF21A	chr12	39288228	39448120
KIF21A_chr12_39288228_39448120	0/0	t0010	1347	2	2	0	0	0	0	copy fasta	KIF21A	chr12	39288228	39448120
KIF21A_chr12_39288228_39448120	0/0	t0011	1347	2	0	0	2	0	0	copy fasta	KIF21A	chr12	39288228	39448120
KIF21A_chr12_39288228_39448120	0/0	t0012	1347	1	1	0	0	0	0	copy fasta	KIF21A	chr12	39288228	39448120
KIF21A_chr12_39288228_39448120	0/0	t0013	1347	1	0	1	0	0	0	copy fasta	KIF21A	chr12	39288228	39448120
KIF21A_chr12_39288228_39448120	0/0	t0014	1347	1	1	0	0	0	0	copy fasta	KIF21A	chr12	39288228	39448120
KIF21A_chr12_39288228_39448120	0/0	t0015	1347	1	0	0	1	0	0	copy fasta	KIF21A	chr12	39288228	39448120
KIF21A_chr12_39288228_39448120	0/0	t0016	1348	1	0	0	1	0	0	copy fasta	KIF21A	chr12	39288228	39448120
KIF21B_chr1_200964390_201028714	0/0	t0001	4463	79	22	16	34	1	6	copy fasta	KIF21B	chr1	200964390	201028714
KIF21B_chr1_200964390_201028714	0/1	t0002	4463	68	10	18	22	5	12	copy fasta	KIF21B	chr1	200964390	201028714
KIF21B_chr1_200964390_201028714	0/0	t0003	4463	35	8	3	22	0	2	copy fasta	KIF21B	chr1	200964390	201028714
KIF21B_chr1_200964390_201028714	0/0	t0004	4463	34	0	1	28	0	5	copy fasta	KIF21B	chr1	200964390	201028714
KIF21B_chr1_200964390_201028714	0/0	t0005	4463	33	2	4	21	1	5	copy fasta	KIF21B	chr1	200964390	201028714
KIF21B_chr1_200964390_201028714	0/0	t0006	4463	21	9	7	1	3	1	copy fasta	KIF21B	chr1	200964390	201028714
KIF21B_chr1_200964390_201028714	0/0	t0007	4463	8	7	1	0	0	0	copy fasta	KIF21B	chr1	200964390	201028714
KIF21B_chr1_200964390_201028714	0/0	t0008	4463	8	0	4	0	2	2	copy fasta	KIF21B	chr1	200964390	201028714
KIF21B_chr1_200964390_201028714	1/0	t0009	4463	7	6	0	0	0	0	copy fasta	KIF21B	chr1	200964390	201028714
KIF21B_chr1_200964390_201028714	0/0	t0010	4463	6	5	0	1	0	0	copy fasta	KIF21B	chr1	200964390	201028714
KIF21B_chr1_200964390_201028714	0/0	t0011	4463	6	2	3	0	1	0	copy fasta	KIF21B	chr1	200964390	201028714
KIF21B_chr1_200964390_201028714	0/0	t0012	4463	4	0	0	4	0	0	copy fasta	KIF21B	chr1	200964390	201028714
KIF21B_chr1_200964390_201028714	0/0	t0013	4463	3	1	0	1	0	1	copy fasta	KIF21B	chr1	200964390	201028714
KIF21B_chr1_200964390_201028714	0/0	t0014	4463	3	3	0	0	0	0	copy fasta	KIF21B	chr1	200964390	201028714
KIF21B_chr1_200964390_201028714	0/0	t0015	4463	3	3	0	0	0	0	copy fasta	KIF21B	chr1	200964390	201028714
KIF21B_chr1_200964390_201028714	0/0	t0016	4463	2	1	0	1	0	0	copy fasta	KIF21B	chr1	200964390	201028714