JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KIF21B_chr1_200964390_201028714	0/0	t0017	4463	2	2	0	0	0	0	copy fasta	KIF21B	chr1	200964390	201028714
KIF21B_chr1_200964390_201028714	0/0	t0018	4463	2	2	0	0	0	0	copy fasta	KIF21B	chr1	200964390	201028714
KIF21B_chr1_200964390_201028714	0/0	t0019	4463	2	2	0	0	0	0	copy fasta	KIF21B	chr1	200964390	201028714
KIF21B_chr1_200964390_201028714	0/0	t0020	4463	1	0	0	1	0	0	copy fasta	KIF21B	chr1	200964390	201028714
KIF21B_chr1_200964390_201028714	0/0	t0021	4463	1	0	0	1	0	0	copy fasta	KIF21B	chr1	200964390	201028714
KIF21B_chr1_200964390_201028714	0/0	t0022	4463	1	1	0	0	0	0	copy fasta	KIF21B	chr1	200964390	201028714
KIF21B_chr1_200964390_201028714	0/0	t0023	4463	1	1	0	0	0	0	copy fasta	KIF21B	chr1	200964390	201028714
KIF21B_chr1_200964390_201028714	0/0	t0024	4463	1	0	0	0	1	0	copy fasta	KIF21B	chr1	200964390	201028714
KIF21B_chr1_200964390_201028714	0/0	t0025	4463	1	1	0	0	0	0	copy fasta	KIF21B	chr1	200964390	201028714
KIF21B_chr1_200964390_201028714	0/0	t0026	4463	1	1	0	0	0	0	copy fasta	KIF21B	chr1	200964390	201028714
KIF21B_chr1_200964390_201028714	0/0	t0027	4463	1	1	0	0	0	0	copy fasta	KIF21B	chr1	200964390	201028714
KIF21B_chr1_200964390_201028714	0/0	t0028	4463	1	0	0	1	0	0	copy fasta	KIF21B	chr1	200964390	201028714
KIF21B_chr1_200964390_201028714	0/0	t0029	4463	1	0	0	0	0	1	copy fasta	KIF21B	chr1	200964390	201028714
KIF21B_chr1_200964390_201028714	0/0	t0030	4463	1	0	1	0	0	0	copy fasta	KIF21B	chr1	200964390	201028714
KIF21B_chr1_200964390_201028714	0/0	t0031	4463	1	0	0	0	0	1	copy fasta	KIF21B	chr1	200964390	201028714
KIF21B_chr1_200964390_201028714	0/0	t0032	4463	1	1	0	0	0	0	copy fasta	KIF21B	chr1	200964390	201028714
KIF21B_chr1_200964390_201028714	0/0	t0033	4463	1	0	0	1	0	0	copy fasta	KIF21B	chr1	200964390	201028714
KIF21B_chr1_200964390_201028714	0/0	t0034	4463	1	0	0	1	0	0	copy fasta	KIF21B	chr1	200964390	201028714
KIF21B_chr1_200964390_201028714	0/0	t0035	4463	1	1	0	0	0	0	copy fasta	KIF21B	chr1	200964390	201028714
KIF22_chr16_29785751_29810384	1/1	t0001	84	194	52	45	65	14	16	copy fasta	KIF22	chr16	29785751	29810384
KIF22_chr16_29785751_29810384	0/0	t0002	84	10	10	0	0	0	0	copy fasta	KIF22	chr16	29785751	29810384
KIF22_chr16_29785751_29810384	0/0	t0003	84	1	0	1	0	0	0	copy fasta	KIF22	chr16	29785751	29810384
KIF22_chr16_29785751_29810384	0/0	t0004	84	1	0	0	1	0	0	copy fasta	KIF22	chr16	29785751	29810384
KIF23_chr15_69409349_69453425	0/1	t0001	736	187	41	30	95	8	12	copy fasta	KIF23	chr15	69409349	69453425
KIF23_chr15_69409349_69453425	1/0	t0002	736	97	40	7	47	0	2	copy fasta	KIF23	chr15	69409349	69453425
KIF23_chr15_69409349_69453425	0/0	t0003	730	36	4	2	29	0	1	copy fasta	KIF23	chr15	69409349	69453425
KIF23_chr15_69409349_69453425	0/0	t0004	736	3	3	0	0	0	0	copy fasta	KIF23	chr15	69409349	69453425
KIF23_chr15_69409349_69453425	0/0	t0005	736	2	0	1	0	0	1	copy fasta	KIF23	chr15	69409349	69453425
KIF23_chr15_69409349_69453425	0/0	t0006	736	2	2	0	0	0	0	copy fasta	KIF23	chr15	69409349	69453425
KIF23_chr15_69409349_69453425	0/0	t0007	730	1	0	0	1	0	0	copy fasta	KIF23	chr15	69409349	69453425
KIF24_chr9_34247380_34334268	0/0	t0001	2185	106	16	18	61	2	9	copy fasta	KIF24	chr9	34247380	34334268
KIF24_chr9_34247380_34334268	0/1	t0002	2185	76	9	10	43	3	10	copy fasta	KIF24	chr9	34247380	34334268
KIF24_chr9_34247380_34334268	0/0	t0003	2185	58	7	4	45	0	2	copy fasta	KIF24	chr9	34247380	34334268
KIF24_chr9_34247380_34334268	1/0	t0004	2189	55	19	14	12	3	6	copy fasta	KIF24	chr9	34247380	34334268
KIF24_chr9_34247380_34334268	0/0	t0005	2185	36	0	16	10	3	7	copy fasta	KIF24	chr9	34247380	34334268
KIF24_chr9_34247380_34334268	0/0	t0006	2185	14	0	7	0	5	2	copy fasta	KIF24	chr9	34247380	34334268
KIF24_chr9_34247380_34334268	0/0	t0007	2189	10	9	1	0	0	0	copy fasta	KIF24	chr9	34247380	34334268
KIF24_chr9_34247380_34334268	0/0	t0008	2185	6	6	0	0	0	0	copy fasta	KIF24	chr9	34247380	34334268
KIF24_chr9_34247380_34334268	0/0	t0009	2185	6	5	1	0	0	0	copy fasta	KIF24	chr9	34247380	34334268
KIF24_chr9_34247380_34334268	0/0	t0010	2185	6	5	1	0	0	0	copy fasta	KIF24	chr9	34247380	34334268
KIF24_chr9_34247380_34334268	0/0	t0011	2185	2	0	0	2	0	0	copy fasta	KIF24	chr9	34247380	34334268
KIF24_chr9_34247380_34334268	0/0	t0012	2185	2	0	0	0	0	2	copy fasta	KIF24	chr9	34247380	34334268
KIF24_chr9_34247380_34334268	0/0	t0013	2185	2	2	0	0	0	0	copy fasta	KIF24	chr9	34247380	34334268
KIF24_chr9_34247380_34334268	0/0	t0014	2189	1	1	0	0	0	0	copy fasta	KIF24	chr9	34247380	34334268
KIF24_chr9_34247380_34334268	0/0	t0015	2189	1	1	0	0	0	0	copy fasta	KIF24	chr9	34247380	34334268
KIF24_chr9_34247380_34334268	0/0	t0016	2167	1	0	0	1	0	0	copy fasta	KIF24	chr9	34247380	34334268
KIF24_chr9_34247380_34334268	0/0	t0017	2185	1	0	0	1	0	0	copy fasta	KIF24	chr9	34247380	34334268
KIF24_chr9_34247380_34334268	0/0	t0018	2185	1	0	0	0	0	1	copy fasta	KIF24	chr9	34247380	34334268
KIF24_chr9_34247380_34334268	0/0	t0019	2185	1	0	0	1	0	0	copy fasta	KIF24	chr9	34247380	34334268
KIF24_chr9_34247380_34334268	0/0	t0020	2189	1	1	0	0	0	0	copy fasta	KIF24	chr9	34247380	34334268