JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KIF24_chr9_34247380_34334268	0/0	t0021	2185	1	1	0	0	0	0	copy fasta	KIF24	chr9	34247380	34334268
KIF24_chr9_34247380_34334268	0/0	t0022	2185	1	1	0	0	0	0	copy fasta	KIF24	chr9	34247380	34334268
KIF24_chr9_34247380_34334268	0/0	t0023	2189	1	0	0	0	0	1	copy fasta	KIF24	chr9	34247380	34334268
KIF24_chr9_34247380_34334268	0/0	t0024	2185	1	1	0	0	0	0	copy fasta	KIF24	chr9	34247380	34334268
KIF25_chr6_167992671_168050091	0/0	t0001	1970	80	7	13	50	0	10	copy fasta	KIF25	chr6	167992671	168050091
KIF25_chr6_167992671_168050091	0/0	t0002	1970	50	19	19	5	4	3	copy fasta	KIF25	chr6	167992671	168050091
KIF25_chr6_167992671_168050091	0/0	t0003	1967	39	0	4	25	2	8	copy fasta	KIF25	chr6	167992671	168050091
KIF25_chr6_167992671_168050091	0/0	t0004	1970	33	10	4	19	0	0	copy fasta	KIF25	chr6	167992671	168050091
KIF25_chr6_167992671_168050091	0/0	t0005	1970	29	2	5	13	2	7	copy fasta	KIF25	chr6	167992671	168050091
KIF25_chr6_167992671_168050091	0/0	t0006	1970	18	3	4	7	2	2	copy fasta	KIF25	chr6	167992671	168050091
KIF25_chr6_167992671_168050091	1/0	t0007	1894	16	0	2	5	3	5	copy fasta	KIF25	chr6	167992671	168050091
KIF25_chr6_167992671_168050091	0/0	t0008	1970	10	7	2	0	1	0	copy fasta	KIF25	chr6	167992671	168050091
KIF25_chr6_167992671_168050091	0/0	t0009	1970	9	5	1	3	0	0	copy fasta	KIF25	chr6	167992671	168050091
KIF25_chr6_167992671_168050091	0/0	t0010	1970	6	5	1	0	0	0	copy fasta	KIF25	chr6	167992671	168050091
KIF25_chr6_167992671_168050091	0/0	t0011	1970	6	1	1	3	0	1	copy fasta	KIF25	chr6	167992671	168050091
KIF25_chr6_167992671_168050091	0/0	t0012	1970	5	3	0	2	0	0	copy fasta	KIF25	chr6	167992671	168050091
KIF25_chr6_167992671_168050091	0/0	t0013	1970	5	0	0	5	0	0	copy fasta	KIF25	chr6	167992671	168050091
KIF25_chr6_167992671_168050091	0/0	t0014	1891	5	0	3	2	0	0	copy fasta	KIF25	chr6	167992671	168050091
KIF25_chr6_167992671_168050091	0/0	t0015	1970	4	4	0	0	0	0	copy fasta	KIF25	chr6	167992671	168050091
KIF25_chr6_167992671_168050091	0/0	t0016	1970	4	3	1	0	0	0	copy fasta	KIF25	chr6	167992671	168050091
KIF25_chr6_167992671_168050091	0/0	t0017	1894	3	1	1	0	1	0	copy fasta	KIF25	chr6	167992671	168050091
KIF25_chr6_167992671_168050091	0/0	t0018	1970	3	2	1	0	0	0	copy fasta	KIF25	chr6	167992671	168050091
KIF25_chr6_167992671_168050091	0/0	t0019	1970	3	0	1	0	1	1	copy fasta	KIF25	chr6	167992671	168050091
KIF25_chr6_167992671_168050091	0/0	t0020	1970	3	3	0	0	0	0	copy fasta	KIF25	chr6	167992671	168050091
KIF25_chr6_167992671_168050091	0/0	t0021	1967	3	0	1	2	0	0	copy fasta	KIF25	chr6	167992671	168050091
KIF25_chr6_167992671_168050091	0/0	t0022	1967	2	0	0	2	0	0	copy fasta	KIF25	chr6	167992671	168050091
KIF25_chr6_167992671_168050091	0/0	t0023	1970	2	2	0	0	0	0	copy fasta	KIF25	chr6	167992671	168050091
KIF25_chr6_167992671_168050091	0/0	t0024	1970	2	2	0	0	0	0	copy fasta	KIF25	chr6	167992671	168050091
KIF25_chr6_167992671_168050091	0/0	t0025	1894	2	0	1	0	1	0	copy fasta	KIF25	chr6	167992671	168050091
KIF25_chr6_167992671_168050091	0/0	t0026	1970	2	0	2	0	0	0	copy fasta	KIF25	chr6	167992671	168050091
KIF25_chr6_167992671_168050091	0/0	t0027	1894	2	0	1	1	0	0	copy fasta	KIF25	chr6	167992671	168050091
KIF25_chr6_167992671_168050091	0/0	t0028	1894	2	2	0	0	0	0	copy fasta	KIF25	chr6	167992671	168050091
KIF25_chr6_167992671_168050091	0/0	t0029	1970	2	0	0	1	0	1	copy fasta	KIF25	chr6	167992671	168050091
KIF25_chr6_167992671_168050091	0/0	t0030	1967	2	0	0	2	0	0	copy fasta	KIF25	chr6	167992671	168050091
KIF25_chr6_167992671_168050091	0/0	t0031	1894	1	0	1	0	0	0	copy fasta	KIF25	chr6	167992671	168050091
KIF25_chr6_167992671_168050091	0/0	t0032	1970	1	0	1	0	0	0	copy fasta	KIF25	chr6	167992671	168050091
KIF25_chr6_167992671_168050091	0/0	t0033	1894	1	1	0	0	0	0	copy fasta	KIF25	chr6	167992671	168050091
KIF25_chr6_167992671_168050091	0/0	t0034	1971	1	0	0	1	0	0	copy fasta	KIF25	chr6	167992671	168050091
KIF25_chr6_167992671_168050091	0/0	t0035	1969	1	0	0	1	0	0	copy fasta	KIF25	chr6	167992671	168050091
KIF25_chr6_167992671_168050091	0/0	t0036	1970	1	0	0	0	0	1	copy fasta	KIF25	chr6	167992671	168050091
KIF25_chr6_167992671_168050091	0/0	t0037	1970	1	0	0	1	0	0	copy fasta	KIF25	chr6	167992671	168050091
KIF25_chr6_167992671_168050091	0/0	t0038	1970	1	0	1	0	0	0	copy fasta	KIF25	chr6	167992671	168050091
KIF25_chr6_167992671_168050091	0/0	t0039	1970	1	0	1	0	0	0	copy fasta	KIF25	chr6	167992671	168050091
KIF25_chr6_167992671_168050091	0/0	t0040	1970	1	0	1	0	0	0	copy fasta	KIF25	chr6	167992671	168050091
KIF25_chr6_167992671_168050091	0/0	t0041	1970	1	0	0	1	0	0	copy fasta	KIF25	chr6	167992671	168050091
KIF25_chr6_167992671_168050091	0/0	t0042	1970	1	1	0	0	0	0	copy fasta	KIF25	chr6	167992671	168050091
KIF25_chr6_167992671_168050091	0/0	t0043	1894	1	1	0	0	0	0	copy fasta	KIF25	chr6	167992671	168050091
KIF25_chr6_167992671_168050091	0/0	t0044	1970	1	0	0	1	0	0	copy fasta	KIF25	chr6	167992671	168050091
KIF25_chr6_167992671_168050091	0/0	t0045	2046	1	0	0	0	1	0	copy fasta	KIF25	chr6	167992671	168050091
KIF25_chr6_167992671_168050091	0/0	t0046	1970	1	0	0	0	0	1	copy fasta	KIF25	chr6	167992671	168050091