JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KIF25_chr6_167992671_168050091	0/0	t0047	1970	1	0	1	0	0	0	copy fasta	KIF25	chr6	167992671	168050091
KIF25_chr6_167992671_168050091	0/0	t0048	1894	1	1	0	0	0	0	copy fasta	KIF25	chr6	167992671	168050091
KIF25_chr6_167992671_168050091	0/0	t0049	1894	1	1	0	0	0	0	copy fasta	KIF25	chr6	167992671	168050091
KIF25_chr6_167992671_168050091	0/0	t0050	1816	1	0	1	0	0	0	copy fasta	KIF25	chr6	167992671	168050091
KIF25_chr6_167992671_168050091	0/0	t0051	1967	1	0	0	1	0	0	copy fasta	KIF25	chr6	167992671	168050091
KIF25_chr6_167992671_168050091	0/0	t0052	1967	1	0	0	1	0	0	copy fasta	KIF25	chr6	167992671	168050091
KIF25_chr6_167992671_168050091	0/0	t0053	1967	1	0	1	0	0	0	copy fasta	KIF25	chr6	167992671	168050091
KIF26A_chr14_104133587_104185894	0/0	t0001	1235	132	27	33	39	6	27	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	1/0	t0002	1241	59	4	14	28	5	7	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	t0003	1235	32	11	10	10	1	0	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/1	t0004	1236	21	4	3	9	3	1	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	t0005	1241	17	0	1	16	0	0	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	t0006	1236	11	6	0	4	1	0	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	t0007	1237	11	11	0	0	0	0	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	t0008	1236	9	0	2	0	1	6	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	t0009	1235	8	6	2	0	0	0	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	t0010	1235	7	0	2	5	0	0	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	t0011	1236	5	2	2	1	0	0	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	t0012	1236	5	3	2	0	0	0	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	t0013	1236	5	0	5	0	0	0	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	t0014	1241	3	0	0	3	0	0	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	t0015	1235	3	0	0	2	0	1	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	t0016	1236	3	3	0	0	0	0	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	t0017	1236	3	1	0	1	1	0	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	t0018	1235	3	3	0	0	0	0	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	t0019	1235	3	1	2	0	0	0	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	t0020	1235	2	2	0	0	0	0	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	t0021	1236	2	0	0	2	0	0	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	t0022	1236	2	0	2	0	0	0	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	t0023	1236	2	0	0	2	0	0	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	t0024	1235	2	1	0	1	0	0	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	t0025	1236	2	2	0	0	0	0	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	t0026	1235	1	0	1	0	0	0	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	t0027	1241	1	0	0	1	0	0	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	t0028	1236	1	1	0	0	0	0	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	t0029	1236	1	0	0	0	0	1	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	t0030	1236	1	1	0	0	0	0	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	t0031	1235	1	0	1	0	0	0	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	t0032	1236	1	1	0	0	0	0	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	t0033	1235	1	1	0	0	0	0	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	t0034	1241	1	0	0	1	0	0	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	t0035	1240	1	1	0	0	0	0	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	t0036	1240	1	0	0	0	0	1	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	t0037	1240	1	0	1	0	0	0	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	t0038	1236	1	0	1	0	0	0	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	t0039	1235	1	1	0	0	0	0	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	t0040	1235	1	1	0	0	0	0	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	t0041	1235	1	0	0	0	0	1	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	t0042	1235	1	0	0	0	0	1	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	t0043	1235	1	0	0	1	0	0	copy fasta	KIF26A	chr14	104133587	104185894