JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KIF26A_chr14_104133587_104185894	0/0	t0044	1235	1	0	1	0	0	0	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	t0045	1235	1	0	0	1	0	0	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	t0046	1235	1	0	1	0	0	0	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	t0047	1241	1	0	0	1	0	0	copy fasta	KIF26A	chr14	104133587	104185894
KIF26B_chr1_245149985_245714432	0/0	t0001	7267	10	7	3	0	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	t0002	7275	9	0	0	7	0	2	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	t0003	7267	9	1	3	3	1	1	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	t0004	7275	6	5	1	0	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	t0005	7267	6	0	2	3	0	1	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	t0006	7275	5	5	0	0	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	t0007	7267	5	2	2	0	0	1	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	t0008	7275	4	3	1	0	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	t0009	7275	4	1	1	1	0	1	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	t0010	7267	4	0	4	0	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	t0011	7275	3	1	2	0	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	t0012	7267	3	3	0	0	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	t0013	7275	3	2	1	0	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	t0014	7267	3	1	0	0	0	2	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	t0015	7267	3	1	1	0	1	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	t0016	7275	2	2	0	0	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	t0017	7267	2	0	0	0	0	2	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	t0018	7267	2	0	2	0	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	t0019	7255	2	0	2	0	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	t0020	7271	2	2	0	0	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	t0021	7272	2	0	0	2	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	t0022	7275	2	2	0	0	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	t0023	7271	2	2	0	0	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	t0024	7275	2	2	0	0	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	t0025	7275	2	0	0	0	0	2	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	t0026	7267	1	0	1	0	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	t0027	7267	1	1	0	0	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	t0028	7275	1	1	0	0	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	t0029	7275	1	1	0	0	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	t0030	7267	1	1	0	0	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	t0031	7267	1	1	0	0	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	t0032	7271	1	1	0	0	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	t0033	7271	1	0	0	0	0	1	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	t0034	7271	1	1	0	0	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	t0035	7275	1	1	0	0	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	t0036	7275	1	0	0	1	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	t0037	7275	1	1	0	0	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	t0038	7275	1	1	0	0	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	t0039	7275	1	1	0	0	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	t0040	7275	1	1	0	0	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	t0041	7275	1	0	1	0	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	t0042	7275	1	0	1	0	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	t0043	7275	1	1	0	0	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	t0044	7271	1	1	0	0	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	t0045	7271	1	1	0	0	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	t0046	7271	1	0	1	0	0	0	copy fasta	KIF26B	chr1	245149985	245714432