JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KIF26B_chr1_245149985_245714432	0/0	t0047	7271	1	1	0	0	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	t0048	7267	1	1	0	0	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	t0049	7267	1	1	0	0	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	t0050	7267	1	1	0	0	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	t0051	7267	1	1	0	0	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	t0052	7275	1	0	0	1	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	t0053	7267	1	0	0	1	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	t0054	7267	1	1	0	0	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	t0055	7267	1	1	0	0	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	t0056	7255	1	0	1	0	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	t0057	7275	1	1	0	0	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	t0058	7271	1	0	1	0	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	t0059	7275	1	0	1	0	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	t0060	7275	1	0	1	0	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	t0061	7267	1	1	0	0	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	t0062	7271	1	0	0	1	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	t0063	7275	1	1	0	0	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	t0064	7275	1	0	0	1	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	t0065	7275	1	1	0	0	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	t0066	7275	1	1	0	0	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	t0067	7275	1	1	0	0	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	t0068	7275	1	0	0	1	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	t0069	7275	1	0	0	1	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	t0070	7275	1	1	0	0	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	t0071	7275	1	0	0	1	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	t0072	7275	1	1	0	0	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	t0073	7267	1	0	0	1	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	t0074	7267	1	0	0	1	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	t0075	7267	1	0	0	1	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	t0076	7275	1	0	0	0	0	1	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	t0077	7267	1	1	0	0	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	t0078	7267	1	1	0	0	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	t0079	7255	1	0	1	0	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	t0080	7275	1	0	1	0	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	t0081	7267	1	0	1	0	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	t0082	7271	1	1	0	0	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	t0083	7275	1	1	0	0	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	t0084	7271	1	1	0	0	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	t0085	7267	1	0	1	0	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	t0086	7267	1	0	0	1	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	t0087	7271	1	0	1	0	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	t0088	7267	1	1	0	0	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF27_chr9_83829099_83926432	1/1	t0001	3052	301	64	48	135	16	36	copy fasta	KIF27	chr9	83829099	83926432
KIF27_chr9_83829099_83926432	0/0	t0002	3052	13	0	0	13	0	0	copy fasta	KIF27	chr9	83829099	83926432
KIF27_chr9_83829099_83926432	0/0	t0003	3052	5	5	0	0	0	0	copy fasta	KIF27	chr9	83829099	83926432
KIF27_chr9_83829099_83926432	0/0	t0004	3049	4	4	0	0	0	0	copy fasta	KIF27	chr9	83829099	83926432
KIF27_chr9_83829099_83926432	0/0	t0005	3052	4	0	0	4	0	0	copy fasta	KIF27	chr9	83829099	83926432
KIF27_chr9_83829099_83926432	0/0	t0006	3050	3	3	0	0	0	0	copy fasta	KIF27	chr9	83829099	83926432
KIF27_chr9_83829099_83926432	0/0	t0007	3052	2	2	0	0	0	0	copy fasta	KIF27	chr9	83829099	83926432
KIF27_chr9_83829099_83926432	0/0	t0008	3052	2	2	0	0	0	0	copy fasta	KIF27	chr9	83829099	83926432