JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KIF27_chr9_83829099_83926432	0/0	t0009	3052	2	2	0	0	0	0	copy fasta	KIF27	chr9	83829099	83926432
KIF27_chr9_83829099_83926432	0/0	t0010	3125	1	1	0	0	0	0	copy fasta	KIF27	chr9	83829099	83926432
KIF27_chr9_83829099_83926432	0/0	t0011	3050	1	1	0	0	0	0	copy fasta	KIF27	chr9	83829099	83926432
KIF27_chr9_83829099_83926432	0/0	t0012	3052	1	0	0	1	0	0	copy fasta	KIF27	chr9	83829099	83926432
KIF27_chr9_83829099_83926432	0/0	t0013	3052	1	0	0	1	0	0	copy fasta	KIF27	chr9	83829099	83926432
KIF27_chr9_83829099_83926432	0/0	t0014	3052	1	1	0	0	0	0	copy fasta	KIF27	chr9	83829099	83926432
KIF27_chr9_83829099_83926432	0/0	t0015	3052	1	1	0	0	0	0	copy fasta	KIF27	chr9	83829099	83926432
KIF27_chr9_83829099_83926432	0/0	t0016	3052	1	1	0	0	0	0	copy fasta	KIF27	chr9	83829099	83926432
KIF27_chr9_83829099_83926432	0/0	t0017	3052	1	0	0	1	0	0	copy fasta	KIF27	chr9	83829099	83926432
KIF27_chr9_83829099_83926432	0/0	t0018	3052	1	1	0	0	0	0	copy fasta	KIF27	chr9	83829099	83926432
KIF27_chr9_83829099_83926432	0/0	t0019	3052	1	0	0	1	0	0	copy fasta	KIF27	chr9	83829099	83926432
KIF2A_chr5_62301206_62396025	1/0	t0001	5724	127	28	21	54	7	16	copy fasta	KIF2A	chr5	62301206	62396025
KIF2A_chr5_62301206_62396025	0/0	t0002	5732	54	7	10	33	1	3	copy fasta	KIF2A	chr5	62301206	62396025
KIF2A_chr5_62301206_62396025	0/0	t0003	5736	29	9	2	14	0	4	copy fasta	KIF2A	chr5	62301206	62396025
KIF2A_chr5_62301206_62396025	0/0	t0004	5735	29	0	1	24	2	2	copy fasta	KIF2A	chr5	62301206	62396025
KIF2A_chr5_62301206_62396025	0/0	t0005	5733	24	2	4	17	1	0	copy fasta	KIF2A	chr5	62301206	62396025
KIF2A_chr5_62301206_62396025	0/0	t0006	5733	18	0	4	11	3	0	copy fasta	KIF2A	chr5	62301206	62396025
KIF2A_chr5_62301206_62396025	0/0	t0007	5725	10	0	5	3	0	2	copy fasta	KIF2A	chr5	62301206	62396025
KIF2A_chr5_62301206_62396025	0/0	t0008	5737	8	4	3	0	0	1	copy fasta	KIF2A	chr5	62301206	62396025
KIF2A_chr5_62301206_62396025	0/0	t0009	5734	7	0	1	6	0	0	copy fasta	KIF2A	chr5	62301206	62396025
KIF2A_chr5_62301206_62396025	0/0	t0010	5730	6	6	0	0	0	0	copy fasta	KIF2A	chr5	62301206	62396025
KIF2A_chr5_62301206_62396025	0/1	t0011	5735	5	0	4	0	0	0	copy fasta	KIF2A	chr5	62301206	62396025
KIF2A_chr5_62301206_62396025	0/0	t0012	5738	4	4	0	0	0	0	copy fasta	KIF2A	chr5	62301206	62396025
KIF2A_chr5_62301206_62396025	0/0	t0013	5732	3	0	3	0	0	0	copy fasta	KIF2A	chr5	62301206	62396025
KIF2A_chr5_62301206_62396025	0/0	t0014	5734	3	0	0	2	0	1	copy fasta	KIF2A	chr5	62301206	62396025
KIF2A_chr5_62301206_62396025	0/0	t0015	5731	3	3	0	0	0	0	copy fasta	KIF2A	chr5	62301206	62396025
KIF2A_chr5_62301206_62396025	0/0	t0016	5721	2	2	0	0	0	0	copy fasta	KIF2A	chr5	62301206	62396025
KIF2A_chr5_62301206_62396025	0/0	t0017	5738	2	2	0	0	0	0	copy fasta	KIF2A	chr5	62301206	62396025
KIF2A_chr5_62301206_62396025	0/0	t0018	5734	2	1	0	1	0	0	copy fasta	KIF2A	chr5	62301206	62396025
KIF2A_chr5_62301206_62396025	0/0	t0019	5736	2	2	0	0	0	0	copy fasta	KIF2A	chr5	62301206	62396025
KIF2A_chr5_62301206_62396025	0/0	t0020	5732	2	0	0	0	2	0	copy fasta	KIF2A	chr5	62301206	62396025
KIF2A_chr5_62301206_62396025	0/0	t0021	5733	2	2	0	0	0	0	copy fasta	KIF2A	chr5	62301206	62396025
KIF2A_chr5_62301206_62396025	0/0	t0022	5721	2	2	0	0	0	0	copy fasta	KIF2A	chr5	62301206	62396025
KIF2A_chr5_62301206_62396025	0/0	t0023	5724	2	0	0	2	0	0	copy fasta	KIF2A	chr5	62301206	62396025
KIF2A_chr5_62301206_62396025	0/0	t0024	5732	2	1	1	0	0	0	copy fasta	KIF2A	chr5	62301206	62396025
KIF2A_chr5_62301206_62396025	0/0	t0025	5731	1	1	0	0	0	0	copy fasta	KIF2A	chr5	62301206	62396025
KIF2A_chr5_62301206_62396025	0/0	t0026	5730	1	0	0	1	0	0	copy fasta	KIF2A	chr5	62301206	62396025
KIF2A_chr5_62301206_62396025	0/0	t0027	5738	1	1	0	0	0	0	copy fasta	KIF2A	chr5	62301206	62396025
KIF2A_chr5_62301206_62396025	0/0	t0028	5736	1	0	1	0	0	0	copy fasta	KIF2A	chr5	62301206	62396025
KIF2A_chr5_62301206_62396025	0/0	t0029	5745	1	1	0	0	0	0	copy fasta	KIF2A	chr5	62301206	62396025
KIF2A_chr5_62301206_62396025	0/0	t0030	5743	1	1	0	0	0	0	copy fasta	KIF2A	chr5	62301206	62396025
KIF2A_chr5_62301206_62396025	0/0	t0031	5740	1	1	0	0	0	0	copy fasta	KIF2A	chr5	62301206	62396025
KIF2A_chr5_62301206_62396025	0/0	t0032	5735	1	1	0	0	0	0	copy fasta	KIF2A	chr5	62301206	62396025
KIF2A_chr5_62301206_62396025	0/0	t0033	5720	1	1	0	0	0	0	copy fasta	KIF2A	chr5	62301206	62396025
KIF2A_chr5_62301206_62396025	0/0	t0034	5735	1	0	0	0	0	1	copy fasta	KIF2A	chr5	62301206	62396025
KIF2A_chr5_62301206_62396025	0/0	t0035	5735	1	1	0	0	0	0	copy fasta	KIF2A	chr5	62301206	62396025
KIF2A_chr5_62301206_62396025	0/0	t0036	5721	1	1	0	0	0	0	copy fasta	KIF2A	chr5	62301206	62396025
KIF2A_chr5_62301206_62396025	0/0	t0037	5724	1	0	0	1	0	0	copy fasta	KIF2A	chr5	62301206	62396025
KIF2A_chr5_62301206_62396025	0/0	t0038	5724	1	0	0	1	0	0	copy fasta	KIF2A	chr5	62301206	62396025
KIF2A_chr5_62301206_62396025	0/0	t0039	5735	1	0	0	1	0	0	copy fasta	KIF2A	chr5	62301206	62396025