JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KIF2A_chr5_62301206_62396025	0/0	t0040	5733	1	0	0	1	0	0	copy fasta	KIF2A	chr5	62301206	62396025
KIF2A_chr5_62301206_62396025	0/0	t0041	5731	1	1	0	0	0	0	copy fasta	KIF2A	chr5	62301206	62396025
KIF2A_chr5_62301206_62396025	0/0	t0042	5732	1	1	0	0	0	0	copy fasta	KIF2A	chr5	62301206	62396025
KIF2A_chr5_62301206_62396025	0/0	t0043	5735	1	0	0	1	0	0	copy fasta	KIF2A	chr5	62301206	62396025
KIF2A_chr5_62301206_62396025	0/0	t0044	5732	1	0	0	1	0	0	copy fasta	KIF2A	chr5	62301206	62396025
KIF2A_chr5_62301206_62396025	0/0	t0045	5735	1	1	0	0	0	0	copy fasta	KIF2A	chr5	62301206	62396025
KIF2A_chr5_62301206_62396025	0/0	t0046	5724	1	1	0	0	0	0	copy fasta	KIF2A	chr5	62301206	62396025
KIF2B_chr17_53817927_53830193	0/1	t0001	249	315	63	56	158	13	24	copy fasta	KIF2B	chr17	53817927	53830193
KIF2B_chr17_53817927_53830193	1/0	t0002	246	97	15	18	43	4	16	copy fasta	KIF2B	chr17	53817927	53830193
KIF2B_chr17_53817927_53830193	0/0	t0003	249	13	13	0	0	0	0	copy fasta	KIF2B	chr17	53817927	53830193
KIF2B_chr17_53817927_53830193	0/0	t0004	249	3	0	2	0	1	0	copy fasta	KIF2B	chr17	53817927	53830193
KIF2B_chr17_53817927_53830193	0/0	t0005	249	1	1	0	0	0	0	copy fasta	KIF2B	chr17	53817927	53830193
KIF2B_chr17_53817927_53830193	0/0	t0006	249	1	0	0	1	0	0	copy fasta	KIF2B	chr17	53817927	53830193
KIF2C_chr1_44734837_44772767	1/0	t0001	685	256	43	47	121	12	32	copy fasta	KIF2C	chr1	44734837	44772767
KIF2C_chr1_44734837_44772767	0/1	t0002	685	107	33	17	44	4	8	copy fasta	KIF2C	chr1	44734837	44772767
KIF2C_chr1_44734837_44772767	0/0	t0003	684	6	6	0	0	0	0	copy fasta	KIF2C	chr1	44734837	44772767
KIF2C_chr1_44734837_44772767	0/0	t0004	685	1	1	0	0	0	0	copy fasta	KIF2C	chr1	44734837	44772767
KIF2C_chr1_44734837_44772767	0/0	t0005	685	1	0	0	1	0	0	copy fasta	KIF2C	chr1	44734837	44772767
KIF2C_chr1_44734837_44772767	0/0	t0006	685	1	1	0	0	0	0	copy fasta	KIF2C	chr1	44734837	44772767
KIF2C_chr1_44734837_44772767	0/0	t0007	685	1	1	0	0	0	0	copy fasta	KIF2C	chr1	44734837	44772767
KIF2C_chr1_44734837_44772767	0/0	t0008	685	1	1	0	0	0	0	copy fasta	KIF2C	chr1	44734837	44772767
KIF3A_chr5_132687631_132742546	0/0	t0001	4132	48	5	13	28	2	0	copy fasta	KIF3A	chr5	132687631	132742546
KIF3A_chr5_132687631_132742546	0/0	t0002	4133	44	8	0	35	0	1	copy fasta	KIF3A	chr5	132687631	132742546
KIF3A_chr5_132687631_132742546	0/0	t0003	4130	38	3	8	17	2	8	copy fasta	KIF3A	chr5	132687631	132742546
KIF3A_chr5_132687631_132742546	0/1	t0004	4130	35	0	13	10	5	6	copy fasta	KIF3A	chr5	132687631	132742546
KIF3A_chr5_132687631_132742546	1/0	t0005	4131	29	0	8	16	0	4	copy fasta	KIF3A	chr5	132687631	132742546
KIF3A_chr5_132687631_132742546	0/0	t0006	4132	16	0	0	16	0	0	copy fasta	KIF3A	chr5	132687631	132742546
KIF3A_chr5_132687631_132742546	0/0	t0007	4132	16	15	1	0	0	0	copy fasta	KIF3A	chr5	132687631	132742546
KIF3A_chr5_132687631_132742546	0/0	t0008	4130	14	12	2	0	0	0	copy fasta	KIF3A	chr5	132687631	132742546
KIF3A_chr5_132687631_132742546	0/0	t0009	4130	11	11	0	0	0	0	copy fasta	KIF3A	chr5	132687631	132742546
KIF3A_chr5_132687631_132742546	0/0	t0010	4132	11	1	0	9	0	1	copy fasta	KIF3A	chr5	132687631	132742546
KIF3A_chr5_132687631_132742546	0/0	t0011	4129	9	9	0	0	0	0	copy fasta	KIF3A	chr5	132687631	132742546
KIF3A_chr5_132687631_132742546	0/0	t0012	4132	7	0	1	6	0	0	copy fasta	KIF3A	chr5	132687631	132742546
KIF3A_chr5_132687631_132742546	0/0	t0013	4132	5	0	1	3	1	0	copy fasta	KIF3A	chr5	132687631	132742546
KIF3A_chr5_132687631_132742546	0/0	t0014	4130	4	0	1	0	2	1	copy fasta	KIF3A	chr5	132687631	132742546
KIF3A_chr5_132687631_132742546	0/0	t0015	4133	4	4	0	0	0	0	copy fasta	KIF3A	chr5	132687631	132742546
KIF3A_chr5_132687631_132742546	0/0	t0016	4130	3	2	1	0	0	0	copy fasta	KIF3A	chr5	132687631	132742546
KIF3A_chr5_132687631_132742546	0/0	t0017	4130	3	3	0	0	0	0	copy fasta	KIF3A	chr5	132687631	132742546
KIF3A_chr5_132687631_132742546	0/0	t0018	4130	3	3	0	0	0	0	copy fasta	KIF3A	chr5	132687631	132742546
KIF3A_chr5_132687631_132742546	0/0	t0019	4131	3	0	2	1	0	0	copy fasta	KIF3A	chr5	132687631	132742546
KIF3A_chr5_132687631_132742546	0/0	t0020	4132	3	0	0	3	0	0	copy fasta	KIF3A	chr5	132687631	132742546
KIF3A_chr5_132687631_132742546	0/0	t0021	4130	2	1	1	0	0	0	copy fasta	KIF3A	chr5	132687631	132742546
KIF3A_chr5_132687631_132742546	0/0	t0022	4130	2	2	0	0	0	0	copy fasta	KIF3A	chr5	132687631	132742546
KIF3A_chr5_132687631_132742546	0/0	t0023	4130	2	2	0	0	0	0	copy fasta	KIF3A	chr5	132687631	132742546
KIF3A_chr5_132687631_132742546	0/0	t0024	4133	2	0	0	2	0	0	copy fasta	KIF3A	chr5	132687631	132742546
KIF3A_chr5_132687631_132742546	0/0	t0025	4132	2	0	0	2	0	0	copy fasta	KIF3A	chr5	132687631	132742546
KIF3A_chr5_132687631_132742546	0/0	t0026	4130	2	2	0	0	0	0	copy fasta	KIF3A	chr5	132687631	132742546
KIF3A_chr5_132687631_132742546	0/0	t0027	4130	2	0	2	0	0	0	copy fasta	KIF3A	chr5	132687631	132742546
KIF3A_chr5_132687631_132742546	0/0	t0028	4130	1	1	0	0	0	0	copy fasta	KIF3A	chr5	132687631	132742546
KIF3A_chr5_132687631_132742546	0/0	t0029	4130	1	1	0	0	0	0	copy fasta	KIF3A	chr5	132687631	132742546