JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KIF3A_chr5_132687631_132742546	0/0	t0030	4130	1	0	1	0	0	0	copy fasta	KIF3A	chr5	132687631	132742546
KIF3A_chr5_132687631_132742546	0/0	t0031	4133	1	0	0	1	0	0	copy fasta	KIF3A	chr5	132687631	132742546
KIF3A_chr5_132687631_132742546	0/0	t0032	4130	1	1	0	0	0	0	copy fasta	KIF3A	chr5	132687631	132742546
KIF3A_chr5_132687631_132742546	0/0	t0033	4130	1	0	0	1	0	0	copy fasta	KIF3A	chr5	132687631	132742546
KIF3A_chr5_132687631_132742546	0/0	t0034	4130	1	0	0	0	0	1	copy fasta	KIF3A	chr5	132687631	132742546
KIF3A_chr5_132687631_132742546	0/0	t0035	4130	1	0	0	0	0	1	copy fasta	KIF3A	chr5	132687631	132742546
KIF3A_chr5_132687631_132742546	0/0	t0036	4130	1	1	0	0	0	0	copy fasta	KIF3A	chr5	132687631	132742546
KIF3A_chr5_132687631_132742546	0/0	t0037	4130	1	1	0	0	0	0	copy fasta	KIF3A	chr5	132687631	132742546
KIF3A_chr5_132687631_132742546	0/0	t0038	4130	1	0	0	0	0	1	copy fasta	KIF3A	chr5	132687631	132742546
KIF3A_chr5_132687631_132742546	0/0	t0039	4129	1	1	0	0	0	0	copy fasta	KIF3A	chr5	132687631	132742546
KIF3A_chr5_132687631_132742546	0/0	t0040	4130	1	1	0	0	0	0	copy fasta	KIF3A	chr5	132687631	132742546
KIF3A_chr5_132687631_132742546	0/0	t0041	4130	1	1	0	0	0	0	copy fasta	KIF3A	chr5	132687631	132742546
KIF3A_chr5_132687631_132742546	0/0	t0042	4130	1	0	1	0	0	0	copy fasta	KIF3A	chr5	132687631	132742546
KIF3A_chr5_132687631_132742546	0/0	t0043	4130	1	0	1	0	0	0	copy fasta	KIF3A	chr5	132687631	132742546
KIF3A_chr5_132687631_132742546	0/0	t0044	4130	1	0	0	1	0	0	copy fasta	KIF3A	chr5	132687631	132742546
KIF3A_chr5_132687631_132742546	0/0	t0045	4131	1	0	0	1	0	0	copy fasta	KIF3A	chr5	132687631	132742546
KIF3A_chr5_132687631_132742546	0/0	t0046	4132	1	0	1	0	0	0	copy fasta	KIF3A	chr5	132687631	132742546
KIF3A_chr5_132687631_132742546	0/0	t0047	4132	1	0	0	1	0	0	copy fasta	KIF3A	chr5	132687631	132742546
KIF3A_chr5_132687631_132742546	0/0	t0048	4133	1	0	1	0	0	0	copy fasta	KIF3A	chr5	132687631	132742546
KIF3A_chr5_132687631_132742546	0/0	t0049	4131	1	0	0	1	0	0	copy fasta	KIF3A	chr5	132687631	132742546
KIF3A_chr5_132687631_132742546	0/0	t0050	4131	1	0	0	1	0	0	copy fasta	KIF3A	chr5	132687631	132742546
KIF3A_chr5_132687631_132742546	0/0	t0051	4132	1	0	0	1	0	0	copy fasta	KIF3A	chr5	132687631	132742546
KIF3A_chr5_132687631_132742546	0/0	t0052	4132	1	0	1	0	0	0	copy fasta	KIF3A	chr5	132687631	132742546
KIF3A_chr5_132687631_132742546	0/0	t0053	4132	1	1	0	0	0	0	copy fasta	KIF3A	chr5	132687631	132742546
KIF3B_chr20_32272651_32340011	0/1	t0001	3873	61	6	7	35	3	9	copy fasta	KIF3B	chr20	32272651	32340011
KIF3B_chr20_32272651_32340011	0/0	t0002	3873	23	1	10	0	4	8	copy fasta	KIF3B	chr20	32272651	32340011
KIF3B_chr20_32272651_32340011	0/0	t0003	3874	18	0	2	16	0	0	copy fasta	KIF3B	chr20	32272651	32340011
KIF3B_chr20_32272651_32340011	0/0	t0004	3875	17	9	0	7	0	1	copy fasta	KIF3B	chr20	32272651	32340011
KIF3B_chr20_32272651_32340011	0/0	t0005	3874	15	1	4	8	0	2	copy fasta	KIF3B	chr20	32272651	32340011
KIF3B_chr20_32272651_32340011	0/0	t0006	3874	12	1	4	0	0	7	copy fasta	KIF3B	chr20	32272651	32340011
KIF3B_chr20_32272651_32340011	0/0	t0007	3874	11	1	3	7	0	0	copy fasta	KIF3B	chr20	32272651	32340011
KIF3B_chr20_32272651_32340011	0/0	t0008	3874	8	8	0	0	0	0	copy fasta	KIF3B	chr20	32272651	32340011
KIF3B_chr20_32272651_32340011	0/0	t0009	3873	6	0	2	4	0	0	copy fasta	KIF3B	chr20	32272651	32340011
KIF3B_chr20_32272651_32340011	0/0	t0010	3878	5	5	0	0	0	0	copy fasta	KIF3B	chr20	32272651	32340011
KIF3B_chr20_32272651_32340011	0/0	t0011	3874	5	0	5	0	0	0	copy fasta	KIF3B	chr20	32272651	32340011
KIF3B_chr20_32272651_32340011	0/0	t0012	3875	4	0	2	1	1	0	copy fasta	KIF3B	chr20	32272651	32340011
KIF3B_chr20_32272651_32340011	0/0	t0013	3873	4	0	4	0	0	0	copy fasta	KIF3B	chr20	32272651	32340011
KIF3B_chr20_32272651_32340011	0/0	t0014	3873	3	2	1	0	0	0	copy fasta	KIF3B	chr20	32272651	32340011
KIF3B_chr20_32272651_32340011	0/0	t0015	3872	3	3	0	0	0	0	copy fasta	KIF3B	chr20	32272651	32340011
KIF3B_chr20_32272651_32340011	0/0	t0016	3875	3	0	2	0	1	0	copy fasta	KIF3B	chr20	32272651	32340011
KIF3B_chr20_32272651_32340011	0/0	t0017	3873	3	0	2	0	0	1	copy fasta	KIF3B	chr20	32272651	32340011
KIF3B_chr20_32272651_32340011	0/0	t0018	3871	2	1	1	0	0	0	copy fasta	KIF3B	chr20	32272651	32340011
KIF3B_chr20_32272651_32340011	0/0	t0019	3873	2	0	1	0	1	0	copy fasta	KIF3B	chr20	32272651	32340011
KIF3B_chr20_32272651_32340011	0/0	t0020	3873	2	0	0	0	1	1	copy fasta	KIF3B	chr20	32272651	32340011
KIF3B_chr20_32272651_32340011	0/0	t0021	3874	2	2	0	0	0	0	copy fasta	KIF3B	chr20	32272651	32340011
KIF3B_chr20_32272651_32340011	0/0	t0022	3873	2	2	0	0	0	0	copy fasta	KIF3B	chr20	32272651	32340011
KIF3B_chr20_32272651_32340011	0/0	t0023	3873	2	0	0	1	0	1	copy fasta	KIF3B	chr20	32272651	32340011
KIF3B_chr20_32272651_32340011	0/0	t0024	3873	2	1	1	0	0	0	copy fasta	KIF3B	chr20	32272651	32340011
KIF3B_chr20_32272651_32340011	0/0	t0025	3873	2	2	0	0	0	0	copy fasta	KIF3B	chr20	32272651	32340011
KIF3B_chr20_32272651_32340011	0/0	t0026	3877	2	2	0	0	0	0	copy fasta	KIF3B	chr20	32272651	32340011