JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KIF3B_chr20_32272651_32340011	0/0	t0027	3876	2	1	0	0	1	0	copy fasta	KIF3B	chr20	32272651	32340011
KIF3B_chr20_32272651_32340011	0/0	t0028	3876	2	0	2	0	0	0	copy fasta	KIF3B	chr20	32272651	32340011
KIF3B_chr20_32272651_32340011	0/0	t0029	3883	1	1	0	0	0	0	copy fasta	KIF3B	chr20	32272651	32340011
KIF3B_chr20_32272651_32340011	0/0	t0030	3858	1	0	0	1	0	0	copy fasta	KIF3B	chr20	32272651	32340011
KIF3B_chr20_32272651_32340011	0/0	t0031	3873	1	1	0	0	0	0	copy fasta	KIF3B	chr20	32272651	32340011
KIF3B_chr20_32272651_32340011	0/0	t0032	3872	1	1	0	0	0	0	copy fasta	KIF3B	chr20	32272651	32340011
KIF3B_chr20_32272651_32340011	0/0	t0033	3872	1	0	1	0	0	0	copy fasta	KIF3B	chr20	32272651	32340011
KIF3B_chr20_32272651_32340011	1/0	t0034	3873	1	0	0	0	0	0	copy fasta	KIF3B	chr20	32272651	32340011
KIF3B_chr20_32272651_32340011	0/0	t0035	3872	1	0	0	1	0	0	copy fasta	KIF3B	chr20	32272651	32340011
KIF3B_chr20_32272651_32340011	0/0	t0036	3873	1	0	0	1	0	0	copy fasta	KIF3B	chr20	32272651	32340011
KIF3B_chr20_32272651_32340011	0/0	t0037	3874	1	0	0	0	0	1	copy fasta	KIF3B	chr20	32272651	32340011
KIF3B_chr20_32272651_32340011	0/0	t0038	3875	1	1	0	0	0	0	copy fasta	KIF3B	chr20	32272651	32340011
KIF3B_chr20_32272651_32340011	0/0	t0039	3874	1	0	1	0	0	0	copy fasta	KIF3B	chr20	32272651	32340011
KIF3B_chr20_32272651_32340011	0/0	t0040	3873	1	0	0	1	0	0	copy fasta	KIF3B	chr20	32272651	32340011
KIF3B_chr20_32272651_32340011	0/0	t0041	3874	1	0	0	0	0	1	copy fasta	KIF3B	chr20	32272651	32340011
KIF3B_chr20_32272651_32340011	0/0	t0042	3878	1	1	0	0	0	0	copy fasta	KIF3B	chr20	32272651	32340011
KIF3B_chr20_32272651_32340011	0/0	t0043	3877	1	1	0	0	0	0	copy fasta	KIF3B	chr20	32272651	32340011
KIF3B_chr20_32272651_32340011	0/0	t0044	3876	1	0	0	0	0	1	copy fasta	KIF3B	chr20	32272651	32340011
KIF3B_chr20_32272651_32340011	0/0	t0045	3876	1	0	0	0	0	1	copy fasta	KIF3B	chr20	32272651	32340011
KIF3B_chr20_32272651_32340011	0/0	t0046	3877	1	0	0	1	0	0	copy fasta	KIF3B	chr20	32272651	32340011
KIF3B_chr20_32272651_32340011	0/0	t0047	3873	1	0	1	0	0	0	copy fasta	KIF3B	chr20	32272651	32340011
KIF3C_chr2_25921598_25987497	0/1	t0001	2961	91	27	27	9	3	24	copy fasta	KIF3C	chr2	25921598	25987497
KIF3C_chr2_25921598_25987497	0/0	t0002	2961	66	14	14	31	2	5	copy fasta	KIF3C	chr2	25921598	25987497
KIF3C_chr2_25921598_25987497	0/0	t0003	2961	12	5	6	0	0	1	copy fasta	KIF3C	chr2	25921598	25987497
KIF3C_chr2_25921598_25987497	0/0	t0004	2961	11	6	3	0	2	0	copy fasta	KIF3C	chr2	25921598	25987497
KIF3C_chr2_25921598_25987497	0/0	t0005	2961	10	7	1	0	1	1	copy fasta	KIF3C	chr2	25921598	25987497
KIF3C_chr2_25921598_25987497	0/0	t0006	2961	8	6	2	0	0	0	copy fasta	KIF3C	chr2	25921598	25987497
KIF3C_chr2_25921598_25987497	0/0	t0007	2961	5	5	0	0	0	0	copy fasta	KIF3C	chr2	25921598	25987497
KIF3C_chr2_25921598_25987497	0/0	t0008	2961	3	1	2	0	0	0	copy fasta	KIF3C	chr2	25921598	25987497
KIF3C_chr2_25921598_25987497	0/0	t0009	2961	3	1	0	0	0	2	copy fasta	KIF3C	chr2	25921598	25987497
KIF3C_chr2_25921598_25987497	0/0	t0010	2961	2	0	2	0	0	0	copy fasta	KIF3C	chr2	25921598	25987497
KIF3C_chr2_25921598_25987497	0/0	t0011	2961	2	2	0	0	0	0	copy fasta	KIF3C	chr2	25921598	25987497
KIF3C_chr2_25921598_25987497	0/0	t0012	2961	2	0	2	0	0	0	copy fasta	KIF3C	chr2	25921598	25987497
KIF3C_chr2_25921598_25987497	0/0	t0013	2961	2	2	0	0	0	0	copy fasta	KIF3C	chr2	25921598	25987497
KIF3C_chr2_25921598_25987497	0/0	t0014	2961	2	2	0	0	0	0	copy fasta	KIF3C	chr2	25921598	25987497
KIF3C_chr2_25921598_25987497	0/0	t0015	2961	2	1	1	0	0	0	copy fasta	KIF3C	chr2	25921598	25987497
KIF3C_chr2_25921598_25987497	0/0	t0016	2961	2	0	0	0	0	2	copy fasta	KIF3C	chr2	25921598	25987497
KIF3C_chr2_25921598_25987497	0/0	t0017	2961	1	1	0	0	0	0	copy fasta	KIF3C	chr2	25921598	25987497
KIF3C_chr2_25921598_25987497	0/0	t0018	2961	1	1	0	0	0	0	copy fasta	KIF3C	chr2	25921598	25987497
KIF3C_chr2_25921598_25987497	0/0	t0019	2961	1	0	0	0	0	1	copy fasta	KIF3C	chr2	25921598	25987497
KIF3C_chr2_25921598_25987497	0/0	t0020	2961	1	0	1	0	0	0	copy fasta	KIF3C	chr2	25921598	25987497
KIF3C_chr2_25921598_25987497	0/0	t0021	2961	1	1	0	0	0	0	copy fasta	KIF3C	chr2	25921598	25987497
KIF3C_chr2_25921598_25987497	0/0	t0022	2961	1	0	0	0	0	1	copy fasta	KIF3C	chr2	25921598	25987497
KIF3C_chr2_25921598_25987497	0/0	t0023	2961	1	0	1	0	0	0	copy fasta	KIF3C	chr2	25921598	25987497
KIF3C_chr2_25921598_25987497	0/0	t0024	2961	1	0	0	0	0	1	copy fasta	KIF3C	chr2	25921598	25987497
KIF3C_chr2_25921598_25987497	0/0	t0025	2961	1	0	1	0	0	0	copy fasta	KIF3C	chr2	25921598	25987497
KIF3C_chr2_25921598_25987497	0/0	t0026	2961	1	1	0	0	0	0	copy fasta	KIF3C	chr2	25921598	25987497
KIF3C_chr2_25921598_25987497	0/0	t0027	2961	1	0	1	0	0	0	copy fasta	KIF3C	chr2	25921598	25987497
KIF3C_chr2_25921598_25987497	0/0	t0028	2961	1	1	0	0	0	0	copy fasta	KIF3C	chr2	25921598	25987497
KIF3C_chr2_25921598_25987497	0/0	t0029	2961	1	0	0	1	0	0	copy fasta	KIF3C	chr2	25921598	25987497