JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KIF3C_chr2_25921598_25987497	0/0	t0030	2961	1	0	0	1	0	0	copy fasta	KIF3C	chr2	25921598	25987497
KIF3C_chr2_25921598_25987497	0/0	t0031	2961	1	1	0	0	0	0	copy fasta	KIF3C	chr2	25921598	25987497
KIF3C_chr2_25921598_25987497	0/0	t0032	2961	1	1	0	0	0	0	copy fasta	KIF3C	chr2	25921598	25987497
KIF3C_chr2_25921598_25987497	1/0	t0033	2961	1	0	0	0	0	0	copy fasta	KIF3C	chr2	25921598	25987497
KIF4A_chrX_70285104_70425886	1/1	t0001	690	239	60	44	99	7	27	copy fasta	KIF4A	chrX	70285104	70425886
KIF4A_chrX_70285104_70425886	0/0	t0002	690	12	0	0	12	0	0	copy fasta	KIF4A	chrX	70285104	70425886
KIF4A_chrX_70285104_70425886	0/0	t0003	690	5	1	2	0	2	0	copy fasta	KIF4A	chrX	70285104	70425886
KIF4A_chrX_70285104_70425886	0/0	t0004	689	1	0	1	0	0	0	copy fasta	KIF4A	chrX	70285104	70425886
KIF4A_chrX_70285104_70425886	0/0	t0005	690	1	1	0	0	0	0	copy fasta	KIF4A	chrX	70285104	70425886
KIF4A_chrX_70285104_70425886	0/0	t0006	690	1	0	0	0	0	1	copy fasta	KIF4A	chrX	70285104	70425886
KIF4B_chr5_155008755_155023141	1/1	t0001	683	400	86	73	179	18	42	copy fasta	KIF4B	chr5	155008755	155023141
KIF4B_chr5_155008755_155023141	0/0	t0002	683	7	0	1	6	0	0	copy fasta	KIF4B	chr5	155008755	155023141
KIF4B_chr5_155008755_155023141	0/0	t0003	683	7	5	2	0	0	0	copy fasta	KIF4B	chr5	155008755	155023141
KIF4B_chr5_155008755_155023141	0/0	t0004	683	4	4	0	0	0	0	copy fasta	KIF4B	chr5	155008755	155023141
KIF4B_chr5_155008755_155023141	0/0	t0005	683	1	1	0	0	0	0	copy fasta	KIF4B	chr5	155008755	155023141
KIF4B_chr5_155008755_155023141	0/0	t0006	711	1	0	0	1	0	0	copy fasta	KIF4B	chr5	155008755	155023141
KIF5A_chr12_57545044_57591633	0/0	t0001	2680	78	2	17	46	3	10	copy fasta	KIF5A	chr12	57545044	57591633
KIF5A_chr12_57545044_57591633	0/0	t0002	2680	50	4	12	25	3	6	copy fasta	KIF5A	chr12	57545044	57591633
KIF5A_chr12_57545044_57591633	0/0	t0003	2680	40	12	1	27	0	0	copy fasta	KIF5A	chr12	57545044	57591633
KIF5A_chr12_57545044_57591633	0/1	t0004	2681	40	8	12	8	6	5	copy fasta	KIF5A	chr12	57545044	57591633
KIF5A_chr12_57545044_57591633	1/0	t0005	2681	20	14	3	2	0	0	copy fasta	KIF5A	chr12	57545044	57591633
KIF5A_chr12_57545044_57591633	0/0	t0006	2681	15	3	2	3	0	7	copy fasta	KIF5A	chr12	57545044	57591633
KIF5A_chr12_57545044_57591633	0/0	t0007	2684	15	0	0	15	0	0	copy fasta	KIF5A	chr12	57545044	57591633
KIF5A_chr12_57545044_57591633	0/0	t0008	2682	8	6	0	1	0	1	copy fasta	KIF5A	chr12	57545044	57591633
KIF5A_chr12_57545044_57591633	0/0	t0009	2681	7	0	1	5	1	0	copy fasta	KIF5A	chr12	57545044	57591633
KIF5A_chr12_57545044_57591633	0/0	t0010	2680	7	0	3	4	0	0	copy fasta	KIF5A	chr12	57545044	57591633
KIF5A_chr12_57545044_57591633	0/0	t0011	2681	6	2	1	2	0	1	copy fasta	KIF5A	chr12	57545044	57591633
KIF5A_chr12_57545044_57591633	0/0	t0012	2681	6	5	1	0	0	0	copy fasta	KIF5A	chr12	57545044	57591633
KIF5A_chr12_57545044_57591633	0/0	t0013	2682	5	5	0	0	0	0	copy fasta	KIF5A	chr12	57545044	57591633
KIF5A_chr12_57545044_57591633	0/0	t0014	2680	5	0	5	0	0	0	copy fasta	KIF5A	chr12	57545044	57591633
KIF5A_chr12_57545044_57591633	0/0	t0015	2685	5	5	0	0	0	0	copy fasta	KIF5A	chr12	57545044	57591633
KIF5A_chr12_57545044_57591633	0/0	t0016	2676	4	0	4	0	0	0	copy fasta	KIF5A	chr12	57545044	57591633
KIF5A_chr12_57545044_57591633	0/0	t0017	2680	4	1	1	0	0	2	copy fasta	KIF5A	chr12	57545044	57591633
KIF5A_chr12_57545044_57591633	0/0	t0018	2681	4	0	1	3	0	0	copy fasta	KIF5A	chr12	57545044	57591633
KIF5A_chr12_57545044_57591633	0/0	t0019	2681	3	2	1	0	0	0	copy fasta	KIF5A	chr12	57545044	57591633
KIF5A_chr12_57545044_57591633	0/0	t0020	2680	3	0	0	0	1	2	copy fasta	KIF5A	chr12	57545044	57591633
KIF5A_chr12_57545044_57591633	0/0	t0021	2681	3	3	0	0	0	0	copy fasta	KIF5A	chr12	57545044	57591633
KIF5A_chr12_57545044_57591633	0/0	t0022	2682	2	2	0	0	0	0	copy fasta	KIF5A	chr12	57545044	57591633
KIF5A_chr12_57545044_57591633	0/0	t0023	2680	2	0	0	2	0	0	copy fasta	KIF5A	chr12	57545044	57591633
KIF5A_chr12_57545044_57591633	0/0	t0024	2682	2	1	0	0	0	1	copy fasta	KIF5A	chr12	57545044	57591633
KIF5A_chr12_57545044_57591633	0/0	t0025	2685	2	0	0	1	0	1	copy fasta	KIF5A	chr12	57545044	57591633
KIF5A_chr12_57545044_57591633	0/0	t0026	2680	2	2	0	0	0	0	copy fasta	KIF5A	chr12	57545044	57591633
KIF5A_chr12_57545044_57591633	0/0	t0027	2680	1	0	0	1	0	0	copy fasta	KIF5A	chr12	57545044	57591633
KIF5A_chr12_57545044_57591633	0/0	t0028	2682	1	1	0	0	0	0	copy fasta	KIF5A	chr12	57545044	57591633
KIF5A_chr12_57545044_57591633	0/0	t0029	2676	1	0	0	1	0	0	copy fasta	KIF5A	chr12	57545044	57591633
KIF5A_chr12_57545044_57591633	0/0	t0030	2680	1	0	0	1	0	0	copy fasta	KIF5A	chr12	57545044	57591633
KIF5A_chr12_57545044_57591633	0/0	t0031	2680	1	1	0	0	0	0	copy fasta	KIF5A	chr12	57545044	57591633
KIF5A_chr12_57545044_57591633	0/0	t0032	2680	1	1	0	0	0	0	copy fasta	KIF5A	chr12	57545044	57591633
KIF5A_chr12_57545044_57591633	0/0	t0033	2681	1	1	0	0	0	0	copy fasta	KIF5A	chr12	57545044	57591633
KIF5A_chr12_57545044_57591633	0/0	t0034	2681	1	1	0	0	0	0	copy fasta	KIF5A	chr12	57545044	57591633