JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KIF5A_chr12_57545044_57591633	0/0	t0035	2681	1	0	0	1	0	0	copy fasta	KIF5A	chr12	57545044	57591633
KIF5A_chr12_57545044_57591633	0/0	t0036	2681	1	1	0	0	0	0	copy fasta	KIF5A	chr12	57545044	57591633
KIF5A_chr12_57545044_57591633	0/0	t0037	2681	1	0	0	1	0	0	copy fasta	KIF5A	chr12	57545044	57591633
KIF5A_chr12_57545044_57591633	0/0	t0038	2680	1	1	0	0	0	0	copy fasta	KIF5A	chr12	57545044	57591633
KIF5A_chr12_57545044_57591633	0/0	t0039	2680	1	0	0	1	0	0	copy fasta	KIF5A	chr12	57545044	57591633
KIF5A_chr12_57545044_57591633	0/0	t0040	2681	1	0	0	1	0	0	copy fasta	KIF5A	chr12	57545044	57591633
KIF5A_chr12_57545044_57591633	0/0	t0041	2681	1	1	0	0	0	0	copy fasta	KIF5A	chr12	57545044	57591633
KIF5A_chr12_57545044_57591633	0/0	t0042	2681	1	1	0	0	0	0	copy fasta	KIF5A	chr12	57545044	57591633
KIF5A_chr12_57545044_57591633	0/0	t0043	2683	1	0	0	1	0	0	copy fasta	KIF5A	chr12	57545044	57591633
KIF5A_chr12_57545044_57591633	0/0	t0044	2684	1	0	0	1	0	0	copy fasta	KIF5A	chr12	57545044	57591633
KIF5A_chr12_57545044_57591633	0/0	t0045	2684	1	0	0	1	0	0	copy fasta	KIF5A	chr12	57545044	57591633
KIF5A_chr12_57545044_57591633	0/0	t0046	2685	1	0	1	0	0	0	copy fasta	KIF5A	chr12	57545044	57591633
KIF5A_chr12_57545044_57591633	0/0	t0047	2686	1	1	0	0	0	0	copy fasta	KIF5A	chr12	57545044	57591633
KIF5A_chr12_57545044_57591633	0/0	t0048	2682	1	1	0	0	0	0	copy fasta	KIF5A	chr12	57545044	57591633
KIF5A_chr12_57545044_57591633	0/0	t0049	2680	1	1	0	0	0	0	copy fasta	KIF5A	chr12	57545044	57591633
KIF5A_chr12_57545044_57591633	0/0	t0050	2682	1	1	0	0	0	0	copy fasta	KIF5A	chr12	57545044	57591633
KIF5B_chr10_32004015_32061425	1/0	t0001	2975	185	46	27	87	6	18	copy fasta	KIF5B	chr10	32004015	32061425
KIF5B_chr10_32004015_32061425	0/0	t0002	2975	105	21	17	56	1	10	copy fasta	KIF5B	chr10	32004015	32061425
KIF5B_chr10_32004015_32061425	0/1	t0003	2976	44	14	15	1	5	8	copy fasta	KIF5B	chr10	32004015	32061425
KIF5B_chr10_32004015_32061425	0/0	t0004	2975	9	2	5	0	2	0	copy fasta	KIF5B	chr10	32004015	32061425
KIF5B_chr10_32004015_32061425	0/0	t0005	2975	3	3	0	0	0	0	copy fasta	KIF5B	chr10	32004015	32061425
KIF5B_chr10_32004015_32061425	0/0	t0006	2975	3	3	0	0	0	0	copy fasta	KIF5B	chr10	32004015	32061425
KIF5B_chr10_32004015_32061425	0/0	t0007	2976	2	2	0	0	0	0	copy fasta	KIF5B	chr10	32004015	32061425
KIF5B_chr10_32004015_32061425	0/0	t0008	2975	2	0	0	2	0	0	copy fasta	KIF5B	chr10	32004015	32061425
KIF5B_chr10_32004015_32061425	0/0	t0009	2975	2	1	1	0	0	0	copy fasta	KIF5B	chr10	32004015	32061425
KIF5B_chr10_32004015_32061425	0/0	t0010	2976	1	0	0	1	0	0	copy fasta	KIF5B	chr10	32004015	32061425
KIF5B_chr10_32004015_32061425	0/0	t0011	2976	1	0	0	0	0	1	copy fasta	KIF5B	chr10	32004015	32061425
KIF5B_chr10_32004015_32061425	0/0	t0012	2976	1	1	0	0	0	0	copy fasta	KIF5B	chr10	32004015	32061425
KIF5B_chr10_32004015_32061425	0/0	t0013	2976	1	1	0	0	0	0	copy fasta	KIF5B	chr10	32004015	32061425
KIF5B_chr10_32004015_32061425	0/0	t0014	2975	1	1	0	0	0	0	copy fasta	KIF5B	chr10	32004015	32061425
KIF5B_chr10_32004015_32061425	0/0	t0015	2975	1	0	0	0	0	1	copy fasta	KIF5B	chr10	32004015	32061425
KIF5B_chr10_32004015_32061425	0/0	t0016	2975	1	1	0	0	0	0	copy fasta	KIF5B	chr10	32004015	32061425
KIF5B_chr10_32004015_32061425	0/0	t0017	2975	1	0	1	0	0	0	copy fasta	KIF5B	chr10	32004015	32061425
KIF5B_chr10_32004015_32061425	0/0	t0018	2975	1	0	0	1	0	0	copy fasta	KIF5B	chr10	32004015	32061425
KIF5C_chr2_148870227_149031759	0/1	t0001	4077	44	8	6	23	1	5	copy fasta	KIF5C	chr2	148870227	149031759
KIF5C_chr2_148870227_149031759	0/0	t0002	4079	38	12	1	20	0	5	copy fasta	KIF5C	chr2	148870227	149031759
KIF5C_chr2_148870227_149031759	0/0	t0003	4073	16	15	1	0	0	0	copy fasta	KIF5C	chr2	148870227	149031759
KIF5C_chr2_148870227_149031759	0/0	t0004	4075	13	6	2	5	0	0	copy fasta	KIF5C	chr2	148870227	149031759
KIF5C_chr2_148870227_149031759	0/0	t0005	4073	12	5	3	3	0	1	copy fasta	KIF5C	chr2	148870227	149031759
KIF5C_chr2_148870227_149031759	1/0	t0006	4081	9	4	2	0	0	2	copy fasta	KIF5C	chr2	148870227	149031759
KIF5C_chr2_148870227_149031759	0/0	t0007	4073	5	5	0	0	0	0	copy fasta	KIF5C	chr2	148870227	149031759
KIF5C_chr2_148870227_149031759	0/0	t0008	4069	5	0	0	3	0	2	copy fasta	KIF5C	chr2	148870227	149031759
KIF5C_chr2_148870227_149031759	0/0	t0009	4067	4	3	1	0	0	0	copy fasta	KIF5C	chr2	148870227	149031759
KIF5C_chr2_148870227_149031759	0/0	t0010	4071	4	4	0	0	0	0	copy fasta	KIF5C	chr2	148870227	149031759
KIF5C_chr2_148870227_149031759	0/0	t0011	4075	3	3	0	0	0	0	copy fasta	KIF5C	chr2	148870227	149031759
KIF5C_chr2_148870227_149031759	0/0	t0012	4077	2	2	0	0	0	0	copy fasta	KIF5C	chr2	148870227	149031759
KIF5C_chr2_148870227_149031759	0/0	t0013	4079	2	2	0	0	0	0	copy fasta	KIF5C	chr2	148870227	149031759
KIF5C_chr2_148870227_149031759	0/0	t0014	4077	2	2	0	0	0	0	copy fasta	KIF5C	chr2	148870227	149031759
KIF5C_chr2_148870227_149031759	0/0	t0015	4071	2	2	0	0	0	0	copy fasta	KIF5C	chr2	148870227	149031759
KIF5C_chr2_148870227_149031759	0/0	t0016	4073	1	1	0	0	0	0	copy fasta	KIF5C	chr2	148870227	149031759