JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KIF5C_chr2_148870227_149031759	0/0	t0017	4073	1	1	0	0	0	0	copy fasta	KIF5C	chr2	148870227	149031759
KIF5C_chr2_148870227_149031759	0/0	t0018	4077	1	1	0	0	0	0	copy fasta	KIF5C	chr2	148870227	149031759
KIF5C_chr2_148870227_149031759	0/0	t0019	4079	1	1	0	0	0	0	copy fasta	KIF5C	chr2	148870227	149031759
KIF5C_chr2_148870227_149031759	0/0	t0020	4081	1	1	0	0	0	0	copy fasta	KIF5C	chr2	148870227	149031759
KIF5C_chr2_148870227_149031759	0/0	t0021	4079	1	0	0	1	0	0	copy fasta	KIF5C	chr2	148870227	149031759
KIF5C_chr2_148870227_149031759	0/0	t0022	4069	1	0	1	0	0	0	copy fasta	KIF5C	chr2	148870227	149031759
KIF5C_chr2_148870227_149031759	0/0	t0023	4081	1	0	0	1	0	0	copy fasta	KIF5C	chr2	148870227	149031759
KIF5C_chr2_148870227_149031759	0/0	t0024	4071	1	0	0	1	0	0	copy fasta	KIF5C	chr2	148870227	149031759
KIF5C_chr2_148870227_149031759	0/0	t0025	4075	1	1	0	0	0	0	copy fasta	KIF5C	chr2	148870227	149031759
KIF5C_chr2_148870227_149031759	0/0	t0026	4075	1	0	0	0	0	1	copy fasta	KIF5C	chr2	148870227	149031759
KIF5C_chr2_148870227_149031759	0/0	t0027	4077	1	0	1	0	0	0	copy fasta	KIF5C	chr2	148870227	149031759
KIF5C_chr2_148870227_149031759	0/0	t0028	4081	1	1	0	0	0	0	copy fasta	KIF5C	chr2	148870227	149031759
KIF5C_chr2_148870227_149031759	0/0	t0029	4077	1	1	0	0	0	0	copy fasta	KIF5C	chr2	148870227	149031759
KIF5C_chr2_148870227_149031759	0/0	t0030	4077	1	1	0	0	0	0	copy fasta	KIF5C	chr2	148870227	149031759
KIF5C_chr2_148870227_149031759	0/0	t0031	4059	1	0	0	0	1	0	copy fasta	KIF5C	chr2	148870227	149031759
KIF5C_chr2_148870227_149031759	0/0	t0032	4079	1	0	0	1	0	0	copy fasta	KIF5C	chr2	148870227	149031759
KIF6_chr6_39324990_39730408	0/0	t0001	6642	34	3	3	19	1	8	copy fasta	KIF6	chr6	39324990	39730408
KIF6_chr6_39324990_39730408	1/0	t0002	6641	28	1	5	14	2	5	copy fasta	KIF6	chr6	39324990	39730408
KIF6_chr6_39324990_39730408	0/1	t0003	6635	19	2	3	5	1	7	copy fasta	KIF6	chr6	39324990	39730408
KIF6_chr6_39324990_39730408	0/0	t0004	6639	10	10	0	0	0	0	copy fasta	KIF6	chr6	39324990	39730408
KIF6_chr6_39324990_39730408	0/0	t0005	6640	9	8	1	0	0	0	copy fasta	KIF6	chr6	39324990	39730408
KIF6_chr6_39324990_39730408	0/0	t0006	6641	7	0	6	1	0	0	copy fasta	KIF6	chr6	39324990	39730408
KIF6_chr6_39324990_39730408	0/0	t0007	6636	5	5	0	0	0	0	copy fasta	KIF6	chr6	39324990	39730408
KIF6_chr6_39324990_39730408	0/0	t0008	6634	4	4	0	0	0	0	copy fasta	KIF6	chr6	39324990	39730408
KIF6_chr6_39324990_39730408	0/0	t0009	6638	3	3	0	0	0	0	copy fasta	KIF6	chr6	39324990	39730408
KIF6_chr6_39324990_39730408	0/0	t0010	6640	3	3	0	0	0	0	copy fasta	KIF6	chr6	39324990	39730408
KIF6_chr6_39324990_39730408	0/0	t0011	6639	3	3	0	0	0	0	copy fasta	KIF6	chr6	39324990	39730408
KIF6_chr6_39324990_39730408	0/0	t0012	6643	3	0	1	2	0	0	copy fasta	KIF6	chr6	39324990	39730408
KIF6_chr6_39324990_39730408	0/0	t0013	6642	2	0	2	0	0	0	copy fasta	KIF6	chr6	39324990	39730408
KIF6_chr6_39324990_39730408	0/0	t0014	6642	2	0	1	1	0	0	copy fasta	KIF6	chr6	39324990	39730408
KIF6_chr6_39324990_39730408	0/0	t0015	6642	2	2	0	0	0	0	copy fasta	KIF6	chr6	39324990	39730408
KIF6_chr6_39324990_39730408	0/0	t0016	6641	2	0	1	0	1	0	copy fasta	KIF6	chr6	39324990	39730408
KIF6_chr6_39324990_39730408	0/0	t0017	6641	2	2	0	0	0	0	copy fasta	KIF6	chr6	39324990	39730408
KIF6_chr6_39324990_39730408	0/0	t0018	6642	2	2	0	0	0	0	copy fasta	KIF6	chr6	39324990	39730408
KIF6_chr6_39324990_39730408	0/0	t0019	6635	2	2	0	0	0	0	copy fasta	KIF6	chr6	39324990	39730408
KIF6_chr6_39324990_39730408	0/0	t0020	6643	2	1	1	0	0	0	copy fasta	KIF6	chr6	39324990	39730408
KIF6_chr6_39324990_39730408	0/0	t0021	6640	1	1	0	0	0	0	copy fasta	KIF6	chr6	39324990	39730408
KIF6_chr6_39324990_39730408	0/0	t0022	6640	1	1	0	0	0	0	copy fasta	KIF6	chr6	39324990	39730408
KIF6_chr6_39324990_39730408	0/0	t0023	6641	1	1	0	0	0	0	copy fasta	KIF6	chr6	39324990	39730408
KIF6_chr6_39324990_39730408	0/0	t0024	6640	1	1	0	0	0	0	copy fasta	KIF6	chr6	39324990	39730408
KIF6_chr6_39324990_39730408	0/0	t0025	6638	1	1	0	0	0	0	copy fasta	KIF6	chr6	39324990	39730408
KIF6_chr6_39324990_39730408	0/0	t0026	6641	1	1	0	0	0	0	copy fasta	KIF6	chr6	39324990	39730408
KIF6_chr6_39324990_39730408	0/0	t0027	6641	1	1	0	0	0	0	copy fasta	KIF6	chr6	39324990	39730408
KIF6_chr6_39324990_39730408	0/0	t0028	6642	1	0	1	0	0	0	copy fasta	KIF6	chr6	39324990	39730408
KIF6_chr6_39324990_39730408	0/0	t0029	6643	1	1	0	0	0	0	copy fasta	KIF6	chr6	39324990	39730408
KIF6_chr6_39324990_39730408	0/0	t0030	6643	1	0	0	1	0	0	copy fasta	KIF6	chr6	39324990	39730408
KIF6_chr6_39324990_39730408	0/0	t0031	6655	1	0	0	0	0	1	copy fasta	KIF6	chr6	39324990	39730408
KIF6_chr6_39324990_39730408	0/0	t0032	6642	1	0	0	1	0	0	copy fasta	KIF6	chr6	39324990	39730408
KIF6_chr6_39324990_39730408	0/0	t0033	6642	1	0	0	0	0	1	copy fasta	KIF6	chr6	39324990	39730408
KIF6_chr6_39324990_39730408	0/0	t0034	6642	1	0	1	0	0	0	copy fasta	KIF6	chr6	39324990	39730408